SRR3552131_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552131_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	335115
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13125	3.916565954970682	No Hit
GAATCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTC	8029	2.395893946854065	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCG	8004	2.38843382122555	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGC	6364	1.899049579994927	No Hit
GCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	2782	0.8301627799412141	No Hit
GAACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCT	1788	0.5335481849514345	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCATTCTCGT	1739	0.518926338719544	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTA	1686	0.503110872387091	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCT	1222	0.36465094072184173	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTC	1198	0.3574892201184668	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTT	874	0.2608059919729048	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCC	596	0.17784939498381153	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATG	482	0.14383122211778046	No Hit
CTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGCT	426	0.12712054070990556	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCATTCTCGTCGT	421	0.12562851558420243	No Hit
CCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	415	0.1238380854333587	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCATTCTCG	371	0.11070826432717128	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTC	30	2.160883E-6	45.000004	6
GGGTGCG	20	7.026127E-4	45.0	7
AGCCGGA	20	7.026127E-4	45.0	21
ACAGTCC	20	7.026127E-4	45.0	39
TACGGGT	20	7.026127E-4	45.0	4
TCGATAG	20	7.026127E-4	45.0	1
AGCGGGT	35	1.208482E-7	45.0	4
CTACGAA	25	3.884871E-5	45.0	11
TACAAGG	20	7.026127E-4	45.0	2
CGTTTTT	6685	0.0	43.95662	1
CGATGAA	440	0.0	42.954544	19
CCGATGA	490	0.0	41.785713	18
ACGGGCG	60	3.6379788E-12	41.250004	5
GGCGAAC	60	3.6379788E-12	41.250004	32
TACGGCT	710	0.0	41.197186	7
GCGAACA	50	1.0768417E-9	40.5	33
CGACAGG	50	1.0768417E-9	40.5	2
CACAACG	150	0.0	40.5	12
ACGGCTG	720	0.0	40.3125	8
CGGCGAT	45	1.9212166E-8	40.0	31