SRR3552130_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552130_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	362453
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14105	3.8915390409239268	No Hit
GAATCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTC	11430	3.153512317459091	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCG	11102	3.0630178257594776	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGC	7997	2.2063550308591733	No Hit
GCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	2959	0.8163817101803543	No Hit
GAACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCT	2326	0.6417383771137223	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTC	1744	0.48116583391501794	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCT	1703	0.4698540224525663	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTA	1563	0.431228324775902	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTT	1232	0.3399061395546457	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCC	548	0.1511920166200859	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCATTCTCGT	515	0.14208738788201505	No Hit
CTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGCT	422	0.11642888871108804	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATG	386	0.1064965664513744	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCATTCTCGTCGT	386	0.1064965664513744	No Hit
CCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	386	0.1064965664513744	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTAT	385	0.10622066861082678	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGACGG	30	2.1613741E-6	45.000004	2
GCTACGA	30	2.1613741E-6	45.000004	4
AGGGCCG	35	1.2088458E-7	45.000004	6
ACCGACG	20	7.026889E-4	45.0	17
CTAAGTT	20	7.026889E-4	45.0	12
CTAACGG	25	3.885504E-5	45.0	2
CTACGCG	20	7.026889E-4	45.0	1
AACACGT	75	0.0	45.0	41
CGTTTTT	7165	0.0	44.057922	1
TACGGCT	870	0.0	43.965515	7
ACGGCTG	900	0.0	42.5	8
CGGCTGT	930	0.0	41.85484	9
GAATCTG	1360	0.0	40.863968	1
CGAGACA	95	0.0	40.263157	22
ACACGAC	90	0.0	40.0	26
GGCCGAT	45	1.9221261E-8	40.0	8
GACGGGT	45	1.9221261E-8	40.0	4
GGCGACT	260	0.0	39.807693	10
ACACGTG	85	0.0	39.705883	42
AAACACG	85	0.0	39.705883	40