##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552130_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 362453 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.035905344968864 30.0 25.0 33.0 16.0 33.0 2 28.744394445624675 31.0 28.0 33.0 16.0 33.0 3 28.481477598474836 31.0 28.0 33.0 16.0 34.0 4 32.352536742694916 35.0 32.0 35.0 28.0 37.0 5 33.66952128965686 35.0 33.0 35.0 30.0 37.0 6 33.4937522934008 35.0 33.0 35.0 28.0 37.0 7 34.267651254093636 35.0 33.0 36.0 32.0 37.0 8 34.236521700744646 35.0 35.0 37.0 31.0 37.0 9 36.02839816472756 39.0 35.0 39.0 30.0 39.0 10 36.02611373060783 37.0 35.0 39.0 31.0 39.0 11 36.20614258952195 37.0 35.0 39.0 32.0 39.0 12 36.15521460713527 37.0 35.0 39.0 32.0 39.0 13 36.167737610117726 37.0 35.0 39.0 32.0 39.0 14 37.34853070605016 39.0 36.0 40.0 32.0 41.0 15 37.25448816812111 39.0 36.0 41.0 32.0 41.0 16 37.19557018427217 39.0 36.0 41.0 32.0 41.0 17 36.25805552719939 38.0 34.0 40.0 29.0 41.0 18 35.84713328348779 38.0 34.0 39.0 29.0 40.0 19 35.3077392103252 37.0 34.0 39.0 29.0 40.0 20 35.38985192562898 36.0 34.0 39.0 30.0 40.0 21 35.968125522481536 37.0 35.0 39.0 31.0 40.0 22 36.373052506118036 38.0 35.0 40.0 32.0 41.0 23 36.60581096031761 38.0 35.0 40.0 32.0 41.0 24 36.50615941929023 38.0 35.0 40.0 32.0 41.0 25 35.86620334222644 37.0 35.0 40.0 31.0 41.0 26 36.00361426171117 37.0 35.0 40.0 31.0 41.0 27 36.36842569933205 38.0 35.0 40.0 32.0 41.0 28 36.16705062449476 38.0 35.0 40.0 31.0 41.0 29 36.164937247036164 38.0 35.0 40.0 31.0 41.0 30 35.79390983106775 38.0 35.0 40.0 30.0 41.0 31 35.60051923973591 38.0 35.0 40.0 30.0 41.0 32 35.26976739053063 38.0 35.0 40.0 26.0 41.0 33 34.66502967281275 38.0 34.0 40.0 21.0 41.0 34 34.23833986751386 38.0 34.0 40.0 18.0 41.0 35 33.81086651234781 38.0 34.0 40.0 15.0 41.0 36 33.62113708536003 38.0 34.0 40.0 13.0 41.0 37 33.378473898684796 38.0 33.0 40.0 10.0 41.0 38 33.285391485240844 38.0 33.0 40.0 10.0 41.0 39 33.1359348660378 38.0 33.0 40.0 10.0 41.0 40 32.85194770080535 37.0 32.0 40.0 10.0 41.0 41 32.540147274267284 37.0 31.0 40.0 10.0 41.0 42 32.63760818644072 37.0 32.0 40.0 10.0 41.0 43 32.63055623763633 37.0 32.0 40.0 10.0 41.0 44 32.53648335094481 37.0 32.0 40.0 10.0 41.0 45 32.530816409299966 37.0 32.0 40.0 10.0 41.0 46 32.30767851280028 36.0 31.0 40.0 10.0 41.0 47 32.23620441822802 36.0 31.0 40.0 10.0 41.0 48 32.22401525163262 36.0 31.0 40.0 10.0 41.0 49 32.22548302814434 36.0 31.0 40.0 10.0 41.0 50 32.151561719726416 36.0 31.0 40.0 10.0 41.0 51 30.212965543118695 35.0 26.0 38.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 9.0 10 11.0 11 9.0 12 8.0 13 21.0 14 22.0 15 33.0 16 81.0 17 189.0 18 417.0 19 674.0 20 966.0 21 1504.0 22 2185.0 23 3319.0 24 5176.0 25 8243.0 26 11832.0 27 12881.0 28 12314.0 29 11430.0 30 11126.0 31 12313.0 32 15007.0 33 20616.0 34 27549.0 35 34781.0 36 41598.0 37 57089.0 38 55991.0 39 15053.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.28051637039837 12.178682477452249 15.827431418694285 29.713369733455096 2 39.863375389360826 28.78000733888256 17.769752216149403 13.586865055607209 3 21.87180130941115 28.626056343856998 37.55604174886123 11.94610059787062 4 20.303046188057486 17.028690616438542 48.69569295881121 13.972570236692757 5 25.617390392685397 20.544456798536636 37.172267852659516 16.665884956118447 6 17.998747423803916 31.812124606500703 38.81523949312049 11.373888476574894 7 56.96490303570394 4.387879256069063 34.95542870385954 3.691789004367463 8 54.493686077919065 11.30077554882978 28.893125453507075 5.3124129197440775 9 50.380049275354324 5.508576284373422 28.51100694434865 15.600367495923608 10 30.321448574022007 19.052677174695752 35.57426756020781 15.05160669107443 11 25.167676912592807 17.73002292711055 40.385925899357986 16.71637426093866 12 21.320281526156496 16.16844114961112 44.41431026919352 18.09696705503886 13 18.204567212852425 18.09945013560379 49.83680642731609 13.859176224227692 14 16.83859700430125 23.416829216477723 41.27073027399415 18.473843505226885 15 14.313855865450142 18.666971993610208 52.14441596565623 14.874756175283416 16 16.67057521940776 21.048522153217107 40.89495741516831 21.385945212206824 17 16.782589742670083 19.014879170540734 44.59585104827384 19.60668003851534 18 18.33975715472075 19.484181397312202 43.70470102330509 18.471360424661956 19 16.75086149100711 22.581686453140133 39.9582842465092 20.70916780934356 20 18.42500958744996 21.617975296107357 45.2453145649229 14.711700551519783 21 18.159871762683714 25.186713863590587 41.602083580491815 15.05133079323388 22 15.955448016708374 18.153802010191665 42.58041732307361 23.310332650026346 23 16.30363109147945 24.397921937464993 42.92280654319319 16.375640427862372 24 20.34746574038565 18.19408309491162 39.98311505215849 21.475336112544248 25 15.17465712795866 26.992189332134096 38.824895917539656 19.008257622367587 26 15.626577790775631 18.346102805053345 42.67974054567075 23.347578858500277 27 18.70697718048961 21.644737386640475 38.585140694103785 21.06314473876613 28 13.58438197504228 20.129782344193593 45.865808808314455 20.42002687244967 29 18.527919481974216 18.72739362069013 39.72680595828976 23.01788093904589 30 15.911304362220758 24.78942097320204 42.01372315858884 17.285551505988362 31 19.049090502768635 18.60682626437083 42.17098492770097 20.173098305159563 32 19.701037099982617 21.943810645794077 40.43034545168615 17.92480680253716 33 17.099044565778186 19.762286420584186 36.50376738501267 26.634901628624952 34 17.9656396829382 19.87209376112213 40.65271911116752 21.50954744477215 35 16.290112097292614 24.851222089484708 33.88246200196991 24.97620381125277 36 20.701166771967674 23.323299848532088 35.40596987747377 20.56956350202647 37 17.714296750199335 24.777557366058495 39.2448124308531 18.263333452889064 38 18.37672746535413 23.248807431584233 33.63111906923105 24.743346033830594 39 21.659635870030044 20.42582072710117 38.3944952862854 19.520048116583393 40 19.3236088541135 20.493139800194786 35.17062901948667 25.012622326205054 41 20.29366566147887 24.216105260544126 34.08910948454007 21.401119593436942 42 19.020397127351686 21.01127594474318 37.651226503850154 22.31710042405498 43 24.587739651761744 20.692889836751245 31.286263322416975 23.433107189070032 44 20.46499822045893 20.955544580952566 34.66711546048729 23.91234173810122 45 18.33037662814213 20.005904213787716 34.65718313822757 27.006536019842574 46 23.555881728113715 23.585126899211758 32.641473515186796 20.217517857487728 47 16.601600759270855 20.595497899037944 42.29679434299068 20.50610699870052 48 20.17392599868121 21.84917768648625 34.01516886327331 23.961727451559238 49 18.671110461218422 18.802989629000173 40.49931991182305 22.026579997958358 50 19.22704460992184 18.931558022695356 37.25889977459146 24.58249759279134 51 18.636347333309423 19.19559225609941 33.761066952128964 28.4069934584622 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 126.0 1 423.5 2 721.0 3 12211.0 4 23701.0 5 15251.5 6 6802.0 7 6249.0 8 5696.0 9 5617.0 10 5538.0 11 5382.0 12 5226.0 13 5021.5 14 4817.0 15 4575.5 16 4334.0 17 4072.5 18 3811.0 19 3550.5 20 3290.0 21 3059.0 22 2828.0 23 2744.5 24 2661.0 25 2835.0 26 2987.5 27 2966.0 28 3335.0 29 3704.0 30 3998.0 31 4292.0 32 4746.5 33 5201.0 34 5842.0 35 6483.0 36 7278.5 37 8074.0 38 8599.5 39 9125.0 40 9804.0 41 10483.0 42 12164.0 43 13845.0 44 15733.5 45 17622.0 46 39588.5 47 61555.0 48 44321.0 49 27087.0 50 26684.5 51 26282.0 52 22823.0 53 19364.0 54 17713.0 55 16062.0 56 14809.5 57 13557.0 58 12417.0 59 11277.0 60 10665.0 61 10053.0 62 8733.5 63 7414.0 64 6656.5 65 5899.0 66 4983.5 67 4068.0 68 3115.0 69 2162.0 70 1851.0 71 1540.0 72 1188.5 73 837.0 74 655.0 75 353.0 76 233.0 77 167.0 78 101.0 79 78.5 80 56.0 81 46.0 82 36.0 83 27.5 84 19.0 85 14.0 86 9.0 87 7.0 88 5.0 89 5.0 90 5.0 91 3.5 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 362453.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.487271373835895 #Duplication Level Percentage of deduplicated Percentage of total 1 78.41784231577543 32.533423047052466 2 7.781111036283585 6.45634130304493 3 3.20729873132196 3.9918621852994116 4 2.0196176032445847 3.3515369430873645 5 1.5650041595351585 3.246387613390854 6 1.2486676606362717 3.108228845552989 7 1.0202683860381592 2.962970598399746 8 0.862528641044747 2.8627167838983447 9 0.6720687666072325 2.509406937190209 >10 3.103873219291685 19.387423559331594 >50 0.06758991777855415 1.8210130050486817 >100 0.026099077162015958 1.881259966795223 >500 0.0013384142134367158 0.29512682182752686 >1k 0.004015242640310147 3.2003075025455336 >5k 6.692071067183579E-4 2.2202532400326738 >10k+ 0.0020076213201550737 10.171741647502447 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14105 3.8915390409239268 No Hit GAATCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTC 11430 3.153512317459091 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCG 11102 3.0630178257594776 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGC 7997 2.2063550308591733 No Hit GCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC 2959 0.8163817101803543 No Hit GAACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCT 2326 0.6417383771137223 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTC 1744 0.48116583391501794 No Hit GAATGACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCT 1703 0.4698540224525663 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTA 1563 0.431228324775902 No Hit GAATGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTT 1232 0.3399061395546457 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCC 548 0.1511920166200859 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCATTCTCGT 515 0.14208738788201505 No Hit CTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGCT 422 0.11642888871108804 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATG 386 0.1064965664513744 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCATTCTCGTCGT 386 0.1064965664513744 No Hit CCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC 386 0.1064965664513744 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTAT 385 0.10622066861082678 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.7589784054760205E-4 0.0 0.0 0.13049967857901576 0.0 2 2.7589784054760205E-4 0.0 0.0 1.25754235721597 0.0 3 2.7589784054760205E-4 0.0 0.0 1.4611549635401004 0.0 4 2.7589784054760205E-4 0.0 0.0 2.40693276093728 0.0 5 2.7589784054760205E-4 0.0 0.0 6.58347427114688 0.0 6 2.7589784054760205E-4 0.0 0.0 7.384681600097116 0.0 7 2.7589784054760205E-4 0.0 0.0 8.343702493840581 0.0 8 2.7589784054760205E-4 0.0 0.0 9.452535915001393 0.0 9 2.7589784054760205E-4 0.0 0.0 9.750505582792803 0.0 10 2.7589784054760205E-4 0.0 0.0 13.65942618767123 0.0 11 2.7589784054760205E-4 0.0 0.0 14.589201910316648 0.0 12 2.7589784054760205E-4 0.0 0.0 17.78327121033624 0.0 13 2.7589784054760205E-4 0.0 0.0 18.26719602265673 0.0 14 2.7589784054760205E-4 0.0 0.0 18.513572794265738 0.0 15 2.7589784054760205E-4 0.0 0.0 19.22594101855965 0.0 16 2.7589784054760205E-4 0.0 0.0 19.807257768593445 0.0 17 2.7589784054760205E-4 0.0 0.0 20.417267894044194 0.0 18 2.7589784054760205E-4 0.0 0.0 21.089079135777606 0.0 19 2.7589784054760205E-4 0.0 0.0 21.629563005410358 0.0 20 2.7589784054760205E-4 0.0 0.0 22.045892846796686 0.0 21 2.7589784054760205E-4 0.0 0.0 22.48622580031066 0.0 22 2.7589784054760205E-4 0.0 0.0 22.983669606817987 0.0 23 2.7589784054760205E-4 0.0 0.0 23.43227949554839 0.0 24 2.7589784054760205E-4 0.0 0.0 23.793153870984654 0.0 25 2.7589784054760205E-4 0.0 0.0 24.11678203794699 0.0 26 2.7589784054760205E-4 0.0 0.0 24.439306613547135 0.0 27 2.7589784054760205E-4 0.0 0.0 24.77590197901521 0.0 28 2.7589784054760205E-4 0.0 0.0 25.095115780528786 0.0 29 2.7589784054760205E-4 0.0 0.0 25.427572678388646 0.0 30 2.7589784054760205E-4 0.0 0.0 25.81686453140131 0.0 31 2.7589784054760205E-4 0.0 0.0 26.167530686737315 0.0 32 2.7589784054760205E-4 0.0 0.0 26.501367073799912 0.0 33 2.7589784054760205E-4 0.0 0.0 26.85479220754139 0.0 34 2.7589784054760205E-4 0.0 0.0 27.198009121182608 0.0 35 2.7589784054760205E-4 0.0 0.0 27.54536450243204 0.0 36 2.7589784054760205E-4 0.0 0.0 27.876993706770257 0.0 37 2.7589784054760205E-4 0.0 0.0 28.206415728384094 0.0 38 2.7589784054760205E-4 0.0 0.0 28.559564964285023 0.0 39 2.7589784054760205E-4 0.0 0.0 28.928164479256623 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGACGG 30 2.1613741E-6 45.000004 2 GCTACGA 30 2.1613741E-6 45.000004 4 AGGGCCG 35 1.2088458E-7 45.000004 6 ACCGACG 20 7.026889E-4 45.0 17 CTAAGTT 20 7.026889E-4 45.0 12 CTAACGG 25 3.885504E-5 45.0 2 CTACGCG 20 7.026889E-4 45.0 1 AACACGT 75 0.0 45.0 41 CGTTTTT 7165 0.0 44.057922 1 TACGGCT 870 0.0 43.965515 7 ACGGCTG 900 0.0 42.5 8 CGGCTGT 930 0.0 41.85484 9 GAATCTG 1360 0.0 40.863968 1 CGAGACA 95 0.0 40.263157 22 ACACGAC 90 0.0 40.0 26 GGCCGAT 45 1.9221261E-8 40.0 8 GACGGGT 45 1.9221261E-8 40.0 4 GGCGACT 260 0.0 39.807693 10 ACACGTG 85 0.0 39.705883 42 AAACACG 85 0.0 39.705883 40 >>END_MODULE