SRR3552127_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552127_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	384607
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12343	3.209249961649164	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTC	9001	2.3403110187802096	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCG	8505	2.2113482073909214	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGC	6116	1.590194666243724	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCT	2634	0.6848549298374705	No Hit
GCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC	2452	0.6375338982389815	TruSeq Adapter, Index 16 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTCACTGTCGTA	1736	0.45136983986250906	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCT	1533	0.3985886892334253	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTCACTGT	1480	0.3848083888228764	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTC	1294	0.33644733455189324	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCC	1069	0.2779460592240911	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTT	694	0.1804439336777542	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGTCACTGTCGT	500	0.13000283406178256	No Hit
CTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGCT	442	0.11492250531061578	TruSeq Adapter, Index 13 (95% over 23bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATG	424	0.1102424032843916	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGGGC	55	1.8189894E-12	45.000004	4
CGAACCC	25	3.8859493E-5	45.0	34
CACGGGC	50	2.1827873E-11	45.0	4
ACGAACG	20	7.0274266E-4	45.0	1
CGTTTTT	6275	0.0	43.709167	1
CCGATGA	660	0.0	43.295452	18
CGATGAA	625	0.0	43.199997	19
GATGAAT	645	0.0	42.55814	20
CGGCGAA	55	6.002665E-11	40.909092	31
ATGAATG	660	0.0	40.90909	21
CGCACGG	50	1.0768417E-9	40.5	2
ACGGCTG	800	0.0	40.21875	8
CGAATGG	45	1.9224899E-8	40.0	2
CGATACC	45	1.9224899E-8	40.0	34
GATACCT	1160	0.0	39.762928	5
TGATACC	1170	0.0	39.615387	4
CACCGAT	730	0.0	39.452057	16
ACCGGTG	40	3.4502227E-7	39.375	17
GGGTATA	40	3.4502227E-7	39.375	7
CCGGTGA	40	3.4502227E-7	39.375	18