##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552124_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 360461 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.093191773867353 30.0 25.0 33.0 16.0 33.0 2 28.56881881812457 31.0 28.0 33.0 16.0 33.0 3 28.480029739694448 31.0 28.0 33.0 16.0 34.0 4 32.47415947911147 35.0 32.0 35.0 28.0 37.0 5 33.645048978946406 35.0 33.0 35.0 30.0 37.0 6 33.40428506828756 35.0 33.0 35.0 28.0 37.0 7 34.15897975093006 35.0 33.0 36.0 32.0 37.0 8 34.134039466128094 35.0 35.0 37.0 30.0 37.0 9 35.95711880064695 39.0 35.0 39.0 30.0 39.0 10 35.83041438602234 37.0 35.0 39.0 31.0 39.0 11 36.082813397288476 37.0 35.0 39.0 31.0 39.0 12 36.03746591170751 37.0 35.0 39.0 31.0 39.0 13 36.073220126449186 37.0 35.0 39.0 31.0 39.0 14 37.28028552326049 39.0 36.0 40.0 32.0 41.0 15 37.156605014134676 39.0 36.0 40.0 31.0 41.0 16 37.10646921580975 39.0 36.0 40.0 32.0 41.0 17 36.16864515162528 38.0 34.0 40.0 29.0 41.0 18 35.811904755299466 38.0 34.0 39.0 29.0 41.0 19 35.29682822829654 37.0 34.0 39.0 27.0 40.0 20 35.423011088578235 37.0 34.0 39.0 29.0 40.0 21 36.06869259087668 37.0 35.0 39.0 31.0 40.0 22 36.50658184935402 38.0 35.0 40.0 32.0 41.0 23 36.73073924779657 38.0 35.0 40.0 32.0 41.0 24 36.64870818202247 38.0 35.0 40.0 32.0 41.0 25 36.04015968440414 38.0 35.0 40.0 31.0 41.0 26 36.16322708975451 38.0 35.0 40.0 31.0 41.0 27 36.52379591689531 38.0 35.0 40.0 32.0 41.0 28 36.34579607780037 38.0 35.0 40.0 31.0 41.0 29 36.36608676111979 38.0 35.0 40.0 31.0 41.0 30 36.00932139676692 38.0 35.0 40.0 30.0 41.0 31 35.75602631075206 38.0 35.0 40.0 30.0 41.0 32 35.552864248836904 38.0 35.0 40.0 28.0 41.0 33 35.08836184774497 38.0 35.0 40.0 23.0 41.0 34 34.645395757099934 38.0 34.0 40.0 21.0 41.0 35 34.496003728558705 38.0 35.0 40.0 18.0 41.0 36 34.127947267526864 38.0 34.0 40.0 16.0 41.0 37 34.07918193646469 38.0 34.0 40.0 15.0 41.0 38 33.84918201969145 38.0 34.0 40.0 15.0 41.0 39 33.74226337939472 38.0 33.0 40.0 15.0 41.0 40 33.57415087901327 38.0 33.0 40.0 15.0 41.0 41 33.301183761904895 38.0 33.0 40.0 12.0 41.0 42 33.44436984861053 38.0 33.0 40.0 12.0 41.0 43 33.46924910045747 38.0 33.0 40.0 12.0 41.0 44 33.417723415293196 38.0 33.0 40.0 12.0 41.0 45 33.34499155248418 37.0 33.0 40.0 12.0 41.0 46 33.2035587761228 37.0 33.0 40.0 12.0 41.0 47 33.11018390339038 37.0 33.0 40.0 12.0 41.0 48 33.069688537733626 37.0 33.0 40.0 12.0 41.0 49 33.042681455136616 37.0 33.0 40.0 12.0 41.0 50 32.967963247064176 37.0 33.0 40.0 12.0 41.0 51 31.055614893150715 35.0 28.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 4.0 9 8.0 10 17.0 11 13.0 12 13.0 13 14.0 14 21.0 15 37.0 16 107.0 17 260.0 18 491.0 19 700.0 20 970.0 21 1525.0 22 2074.0 23 2923.0 24 4482.0 25 7220.0 26 9999.0 27 11091.0 28 10601.0 29 9736.0 30 10046.0 31 11705.0 32 14968.0 33 20276.0 34 26924.0 35 35266.0 36 43325.0 37 59382.0 38 59650.0 39 16611.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.45396866790027 12.2024296664549 16.885876696785505 28.45772496885932 2 36.77623931576509 31.017225164442202 19.153250975833725 13.053284543958984 3 23.375344350706456 29.223965976901802 35.442946671068434 11.957743001323305 4 21.342114680922485 18.137052274725978 46.451904644330455 14.068928400021083 5 27.455674816415645 21.429780198135166 34.679202465731386 16.435342519717803 6 19.06641772618952 34.032807987549276 35.84604159673307 11.054732689528132 7 58.63630184680173 5.081270928061565 32.17463192966784 4.107795295468858 8 57.26028613359004 11.906697257123517 25.624686165771056 5.208330443515387 9 53.24043377785669 5.734600969314295 25.34587653033199 15.679088722497026 10 32.03453355564125 18.98513292700181 33.07986162164562 15.900471895711323 11 25.02212444619529 18.95017768912587 38.456032691470085 17.571665173208753 12 22.23347324675901 17.26927462332957 41.699101983293616 18.798150146617804 13 18.924099971980326 18.994010447732208 47.03893070262802 15.04295887765944 14 17.043730112272897 24.649268575518573 38.86301153245427 19.443989779754258 15 14.671212697074024 19.706154063823824 49.312130854655564 16.310502384446586 16 16.48722053148607 21.720519002055703 38.711816257514684 23.080444208943547 17 16.690848663239574 21.033898258063978 42.18930758112528 20.085945497571167 18 17.268442355761096 21.298559344838967 42.02091210977054 19.41208618962939 19 17.463470389307027 23.202787541509345 37.54747392921842 21.786268139965212 20 18.401435938978143 22.454578997450486 43.306765503064135 15.83721956050724 21 17.84187471044024 26.40146922968088 39.23864162835924 16.51801443151964 22 16.933038525665744 19.102205231633935 39.48748963133321 24.47726661136711 23 17.44737988298318 25.455458426847844 39.976585539073575 17.120576151095403 24 19.72196714762485 20.497363098920548 37.40127225968968 22.37939749376493 25 16.0169893552978 28.588390977109867 36.281317535045396 19.113302132546934 26 17.079795040240136 20.29512207978117 40.24124662584857 22.383836254130127 27 21.03278856797268 21.829546053525902 36.325982561220215 20.811682817281206 28 15.242980516616223 20.75286924244232 42.814340525049865 21.189809715891595 29 22.055367987105402 18.59618655000125 36.08074105104297 23.26770441185038 30 21.914437345510333 23.343718183104414 37.892310125089814 16.84953434629544 31 20.481272592596703 20.4757241421402 37.291412940651 21.751590324612096 32 26.22336397002727 22.247066950377434 34.43534806816827 17.09422101142703 33 22.35248750905091 21.52105220814457 33.60751926005865 22.51894102274587 34 20.2565603491085 24.08499116409265 34.647853720652165 21.010594766146685 35 23.49075212020163 21.98101875098832 34.28415279322867 20.244076335581383 36 19.491983876202973 26.797351169752066 34.67254432518359 19.038120628861375 37 24.59184211329381 23.519049217529776 35.0365226751299 16.852585994046514 38 23.22220711810709 24.02229367393421 32.66955371038753 20.085945497571167 39 24.395149544610927 26.618136220007155 30.92955964722952 18.057154588152393 40 22.381339451424704 22.43793364608099 37.28503222262602 17.895694679868278 41 18.283531366777545 31.299918715200814 30.684318137052273 19.73223178096937 42 19.735283428720443 22.713691633768978 39.137659830050964 18.413365107459615 43 22.46484363079501 24.24478653723981 31.00085723559553 22.289512596369647 44 22.466230743409135 22.497302065965528 32.85237515292916 22.184092037696175 45 20.090661680459192 21.279139768241222 34.363218212233775 24.266980339065807 46 24.221760467845343 25.761455469523746 31.555147436199753 18.46163662643115 47 18.008883069180854 21.89418550134411 41.1081920096765 18.988739419798538 48 21.479716252243655 23.087102349491346 32.78468405735988 22.64849734090512 49 18.651393632043412 20.790876128069332 38.99589692088742 21.561833318999838 50 19.485325735655177 20.96648458501752 36.12873514749169 23.41945453183562 51 20.770346861380286 21.468896773853483 31.926616194262348 25.834140170503883 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 185.0 1 528.5 2 872.0 3 10291.0 4 19710.0 5 12860.0 6 6010.0 7 5642.5 8 5275.0 9 5175.0 10 5075.0 11 4938.0 12 4801.0 13 4560.5 14 4320.0 15 4069.0 16 3818.0 17 3510.5 18 3203.0 19 3083.0 20 2963.0 21 3131.5 22 3300.0 23 3033.5 24 2767.0 25 2846.5 26 3126.5 27 3327.0 28 3701.0 29 4075.0 30 4527.5 31 4980.0 32 5237.5 33 5495.0 34 6448.0 35 7401.0 36 7869.5 37 8338.0 38 9141.0 39 9944.0 40 10706.0 41 11468.0 42 13033.0 43 14598.0 44 15873.0 45 17148.0 46 38944.0 47 60740.0 48 43247.0 49 25754.0 50 25133.5 51 24513.0 52 21914.0 53 19315.0 54 17503.5 55 15692.0 56 14436.0 57 13180.0 58 12474.0 59 11768.0 60 10861.5 61 9955.0 62 9203.0 63 8451.0 64 7522.5 65 6594.0 66 5663.0 67 4732.0 68 4027.0 69 3322.0 70 2615.5 71 1909.0 72 1524.5 73 1140.0 74 948.0 75 546.5 76 337.0 77 241.0 78 145.0 79 104.0 80 63.0 81 54.5 82 46.0 83 30.0 84 14.0 85 17.0 86 20.0 87 13.5 88 7.0 89 6.0 90 5.0 91 4.5 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 360461.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.88131858642383 #Duplication Level Percentage of deduplicated Percentage of total 1 76.20895841455659 30.393137496704565 2 7.828619469071484 6.2443133427584 3 3.5548325235876863 4.253142251837446 4 2.390278116631218 3.81309772318107 5 1.8953308963976834 3.7794147652964143 6 1.5534828870221493 3.7172967561532677 7 1.251285456180797 3.4932039744353527 8 1.0731329217499133 3.42383647503105 9 0.8002732064525923 2.872435563244329 >10 3.373039257250639 19.25065310916502 >50 0.03923706595606636 1.0928632506407645 >100 0.02172051865425102 1.586062851096134 >500 0.0035033094603630676 0.9103933701323474 >1k 0.0035033094603630676 3.1075766326709138 >5k 7.006618920726135E-4 1.9252947575849828 >10k+ 0.0021019856762178406 10.137277680067927 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12939 3.5895700228318734 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCG 12648 3.5088400686898167 No Hit GAATCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCGTCTTC 10691 2.965924191521413 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGC 6890 1.9114411822638233 No Hit GAACTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCGTCTTCT 2638 0.7318406152121866 RNA PCR Primer, Index 23 (95% over 23bp) GAATGACTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCGTCT 2453 0.6805174484895731 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCGTC 2208 0.6125489303974633 No Hit GCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCGTCTTCTGC 2193 0.6083875925550892 RNA PCR Primer, Index 23 (96% over 25bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGTGGATATCGTA 1629 0.4519212896818241 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCC 961 0.26660304443476546 No Hit GAATGCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCGTCTT 684 0.18975700561225764 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGTGGATAT 546 0.15147269746241618 No Hit CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA 536 0.1486984722341668 No Hit CTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCGTCTTCTGCT 531 0.1473113596200421 RNA PCR Primer, Index 30 (95% over 24bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCGTGGATATCGT 448 0.12428529022557226 No Hit CCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCGTCTTCTGC 426 0.11818199472342361 RNA PCR Primer, Index 30 (95% over 23bp) GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCGTGGATATCGTAT 409 0.11346581183539967 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGC 370 0.10264633344522708 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATG 363 0.10070437578545252 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.16423413351236332 0.0 2 0.0 0.0 0.0 1.0561475443945392 0.0 3 0.0 0.0 0.0 1.2608853662393436 0.0 4 0.0 0.0 0.0 2.234360998832051 0.0 5 0.0 0.0 0.0 5.968745578578543 0.0 6 0.0 0.0 0.0 6.577688016179281 0.0 7 0.0 0.0 0.0 7.695978205686607 0.0 8 0.0 0.0 0.0 8.86975289975892 0.0 9 0.0 0.0 0.0 9.15965943611098 0.0 10 0.0 0.0 0.0 13.42031454165638 0.0 11 0.0 0.0 0.0 14.319163515609178 0.0 12 0.0 0.0 0.0 17.06425937896194 0.0 13 0.0 0.0 0.0 17.444883080277755 0.0 14 0.0 0.0 0.0 17.685963252612627 0.0 15 0.0 0.0 0.0 18.366203278579373 0.0 16 0.0 0.0 0.0 18.84919589081759 0.0 17 0.0 0.0 0.0 19.278091111104946 0.0 18 2.7742252282493806E-4 0.0 0.0 19.75914176568339 0.0 19 2.7742252282493806E-4 0.0 0.0 20.213837280593463 0.0 20 2.7742252282493806E-4 0.0 0.0 20.515118140381347 0.0 21 2.7742252282493806E-4 0.0 0.0 20.82666363351375 0.0 22 2.7742252282493806E-4 0.0 0.0 21.210061560057817 0.0 23 2.7742252282493806E-4 0.0 0.0 21.527155503646718 0.0 24 2.7742252282493806E-4 0.0 0.0 21.78266164716849 0.0 25 2.7742252282493806E-4 0.0 0.0 22.014586876250135 0.0 26 5.548450456498761E-4 0.0 0.0 22.253725090925233 0.0 27 5.548450456498761E-4 0.0 0.0 22.523657205633896 0.0 28 5.548450456498761E-4 0.0 0.0 22.74753718155362 0.0 29 5.548450456498761E-4 0.0 0.0 22.983068903431995 0.0 30 5.548450456498761E-4 0.0 0.0 23.268536679418855 0.0 31 5.548450456498761E-4 0.0 0.0 23.51433303464175 0.0 32 5.548450456498761E-4 0.0 0.0 23.752638981748373 0.0 33 5.548450456498761E-4 0.0 0.0 23.983177098215897 0.0 34 5.548450456498761E-4 0.0 0.0 24.23063798857574 0.0 35 5.548450456498761E-4 0.0 0.0 24.472550428479085 0.0 36 5.548450456498761E-4 0.0 0.0 24.705585347652036 0.0 37 5.548450456498761E-4 0.0 0.0 24.92280718302396 0.0 38 5.548450456498761E-4 0.0 0.0 25.15639694724256 0.0 39 5.548450456498761E-4 0.0 0.0 25.401638457419804 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 30 2.1613414E-6 45.000004 25 TCGCAGG 25 3.8854592E-5 45.000004 2 ACACGAC 30 2.1613414E-6 45.000004 26 GTACATG 25 3.8854592E-5 45.000004 1 TCTACGG 30 2.1613414E-6 45.000004 2 TACGAAT 25 3.8854592E-5 45.000004 12 CGGTCTA 25 3.8854592E-5 45.000004 31 GCGTAAG 25 3.8854592E-5 45.000004 1 ACGGTCT 25 3.8854592E-5 45.000004 30 GCGCCCA 20 7.026837E-4 45.0 21 AACGGGC 40 6.7921064E-9 45.0 4 TTAAGCG 20 7.026837E-4 45.0 1 CTTGACA 20 7.026837E-4 45.0 14 TAGTACG 20 7.026837E-4 45.0 1 CGTTTTT 5985 0.0 43.834587 1 GGCGACT 155 0.0 42.096775 10 ACGGCTG 815 0.0 41.96319 8 TACGGCT 820 0.0 41.707317 7 GATACCT 1390 0.0 41.60072 5 TGATACC 1395 0.0 41.451614 4 >>END_MODULE