SRR3552123_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552123_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	400332
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12812	3.200343714716785	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCG	10802	2.69826044383162	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC	9626	2.4045042614629857	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGC	9141	2.2833548155031322	No Hit
GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	2994	0.7478792602140224	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAAGCTGAT	2130	0.532058391535026	No Hit
GAACTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCT	2002	0.5000849295085079	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAAGCTGATCGTA	1975	0.4933405273622893	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCT	1761	0.4398848955367045	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTC	1451	0.36244916719123127	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTT	895	0.22356444151354374	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATG	516	0.12889301879440065	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGT	516	0.12889301879440065	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTAT	407	0.10166561753744392	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATCGAA	30	2.1619435E-6	45.000004	42
CTTAACG	20	7.027772E-4	45.0	1
CGACCCA	20	7.027772E-4	45.0	34
CTAAGAC	20	7.027772E-4	45.0	18
CGTTAGG	25	3.8862352E-5	45.0	2
TGTTGCG	25	3.8862352E-5	45.0	1
CTACGAA	40	6.7957444E-9	45.0	11
TACGAAT	40	6.7957444E-9	45.0	12
CGAATGG	25	3.8862352E-5	45.0	2
CTCGATG	25	3.8862352E-5	45.0	1
CGATCGA	35	1.2092823E-7	45.0	41
AACAGCG	20	7.027772E-4	45.0	1
ACGACCC	20	7.027772E-4	45.0	36
CGTTTTT	6900	0.0	43.66304	1
GCGATCC	100	0.0	42.75	33
GCGATAC	75	0.0	42.0	33
CCGATGA	1390	0.0	41.92446	18
GATGAAT	1340	0.0	41.809704	20
ATGAATG	1330	0.0	41.785717	21
CGATGAA	1330	0.0	41.785717	19