##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552123_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 400332 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.76815243348021 28.0 16.0 31.0 16.0 33.0 2 26.52142471748449 30.0 25.0 31.0 16.0 33.0 3 26.842768002557875 30.0 25.0 33.0 16.0 33.0 4 29.93121209396201 32.0 28.0 35.0 19.0 37.0 5 32.13689887393463 33.0 32.0 35.0 28.0 37.0 6 30.83964559415685 35.0 29.0 35.0 17.0 37.0 7 32.79867210215521 35.0 32.0 35.0 28.0 37.0 8 32.89678316996893 35.0 32.0 36.0 28.0 37.0 9 34.77513413866491 37.0 33.0 39.0 28.0 39.0 10 34.87056243318046 37.0 34.0 39.0 29.0 39.0 11 35.094881248563695 37.0 34.0 39.0 30.0 39.0 12 35.02142971333793 37.0 34.0 39.0 27.0 39.0 13 35.14054334902031 37.0 34.0 39.0 30.0 39.0 14 35.602120240200634 38.0 34.0 40.0 27.0 41.0 15 36.074925311991045 38.0 34.0 40.0 30.0 41.0 16 35.91502802673781 38.0 34.0 40.0 29.0 41.0 17 35.29595185995623 37.0 33.0 40.0 27.0 41.0 18 35.182775796089246 37.0 33.0 39.0 27.0 40.0 19 34.576224233885874 37.0 32.0 39.0 27.0 40.0 20 34.30548145039617 35.0 33.0 39.0 27.0 40.0 21 35.03071450695922 36.0 34.0 39.0 29.0 40.0 22 35.55374289339848 37.0 34.0 39.0 30.0 40.0 23 35.94825045212474 37.0 35.0 40.0 30.0 41.0 24 35.89866161086298 37.0 35.0 40.0 30.0 41.0 25 34.44080663049669 35.0 33.0 39.0 25.0 40.0 26 34.79057632165303 36.0 33.0 39.0 27.0 40.0 27 35.12751666117123 37.0 34.0 39.0 29.0 40.0 28 34.98528970954108 36.0 34.0 40.0 27.0 41.0 29 35.18684991457091 37.0 34.0 40.0 27.0 41.0 30 34.221586083550655 36.0 33.0 40.0 24.0 41.0 31 34.240560334922016 36.0 33.0 39.0 24.0 40.0 32 33.77822657194528 36.0 33.0 39.0 21.0 40.0 33 33.47654946394493 37.0 33.0 40.0 18.0 41.0 34 33.284823596414974 37.0 33.0 40.0 15.0 41.0 35 32.886289379814755 37.0 33.0 40.0 12.0 41.0 36 32.73889671572595 37.0 32.0 40.0 10.0 41.0 37 32.58009102444971 37.0 32.0 40.0 10.0 41.0 38 32.38926940639269 37.0 31.0 40.0 10.0 41.0 39 32.155463465323784 36.0 31.0 40.0 10.0 41.0 40 32.08627589101046 36.0 31.0 40.0 10.0 41.0 41 31.75024729474536 35.0 30.0 40.0 10.0 41.0 42 31.964721780921835 36.0 31.0 40.0 8.0 41.0 43 32.04451805001848 36.0 31.0 40.0 10.0 41.0 44 32.26657124586593 36.0 31.0 40.0 10.0 41.0 45 32.284901032143324 36.0 32.0 40.0 10.0 41.0 46 32.094703895766514 36.0 31.0 40.0 10.0 41.0 47 31.974850873774766 35.0 31.0 40.0 10.0 41.0 48 32.0317436527682 35.0 31.0 40.0 10.0 41.0 49 32.19343444940699 35.0 31.0 40.0 10.0 41.0 50 32.0235979137316 35.0 31.0 40.0 10.0 41.0 51 31.073621394242778 35.0 29.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 21.0 10 17.0 11 23.0 12 18.0 13 25.0 14 33.0 15 55.0 16 137.0 17 305.0 18 666.0 19 1221.0 20 2119.0 21 3418.0 22 4780.0 23 6187.0 24 7970.0 25 10579.0 26 13193.0 27 14404.0 28 13632.0 29 13488.0 30 15067.0 31 18490.0 32 23674.0 33 29433.0 34 34812.0 35 48743.0 36 55809.0 37 53038.0 38 26490.0 39 2479.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.82462556078455 12.043254099097748 15.73319145109559 28.398928889022113 2 37.72418892319374 29.924412737427936 17.863673151284434 14.487725188093883 3 22.7386269396401 28.47686420271175 35.71835376637391 13.066155091274242 4 20.441283734500367 17.344104393353515 48.609404194518554 13.60520767762757 5 30.248393833118513 19.725877521657026 34.241079903679946 15.784648741544519 6 18.408720761767732 34.11168729954138 35.026428064706295 12.453163873984593 7 56.536324850374186 4.1038438096380006 35.87647252780192 3.4833588121858856 8 55.44123377596595 14.462496128213584 25.097918727456207 4.998351368364258 9 51.1110778054215 4.700098917898145 25.311241669414386 18.87758160726597 10 36.88113865491642 16.890730693524375 31.863803043473915 14.36432760808529 11 29.947393663259497 17.19572754613671 36.743752685271225 16.113126105332572 12 21.294825295005147 15.362748918397731 40.77091014458 22.571515642017125 13 22.98267438026438 17.20072339957835 45.698070601400836 14.118531618756434 14 17.817461506949233 25.597254278948473 38.408371052026816 18.17691316207548 15 15.504381363468323 16.986651079603927 47.73562942757511 19.773338129352638 16 17.23869188573484 18.97225302998511 38.05941068912803 25.729644395152025 17 17.6413576731313 22.058191700888262 41.49430972292997 18.80614090305047 18 18.458179710840003 18.001558706273794 40.44343195148027 23.09682963140593 19 17.81596275091674 20.42554679615919 38.17581407431832 23.582676378605758 20 22.76735309692955 19.379664878151136 42.709800865281814 15.1431811596375 21 19.26426066364917 26.770780252390512 38.105622333463224 15.85933675049709 22 17.98407321922804 17.53319744611972 43.18690486895876 21.295824465693475 23 21.095740535355656 22.990417953098927 39.55966547765355 16.35417603389187 24 20.053855300100917 21.36326848715566 37.33526173276181 21.247614479981618 25 16.70288660411858 27.62881808099278 36.66681654226991 19.001478772618725 26 16.642436777474696 18.425456870797237 42.97458109768892 21.957525254039147 27 21.982004935903202 21.374259364727276 36.32959643495898 20.31413926441054 28 15.570326628898016 23.880179451055625 40.97049448957365 19.578999430472706 29 20.774507159057983 18.15318285822767 39.61986551162535 21.452444471088995 30 17.32512015027527 27.007583705524414 38.172316976909165 17.49497916729115 31 20.708811686300372 21.33229419581747 35.24999250621983 22.70890161166232 32 27.156460138085386 22.25228060709611 33.68229369623213 16.908965558586374 33 20.923133798946875 21.43570836205949 32.525004246475426 25.11615359251821 34 20.84794620465014 21.67750766863503 35.24224893338529 22.232297193329536 35 23.382342655595856 25.314988559495617 30.58836165982235 20.71430712508618 36 19.009222345453274 31.301020153272784 29.046891080403263 20.64286642087068 37 22.30773458029835 26.14779732821758 33.11426515991727 18.4302029315668 38 19.852022821058522 27.277609584045244 28.375198585174306 24.49516900972193 39 23.48525723649371 23.7320523965109 32.599942048100075 20.182748318895317 40 22.803822827053548 22.46835126844719 30.909095450775858 23.81873045372341 41 18.141692395311892 27.851882937162152 31.482619425876525 22.52380524164943 42 22.58700278768622 22.74487175644215 33.64732272214062 21.020802733731003 43 22.01897425137136 24.785428094681414 28.870787246585333 24.32481040736189 44 21.28932985621934 23.10906947233796 33.24465693474416 22.35694373669854 45 20.032622922973932 22.18808389037099 32.864222695163015 24.91507049149206 46 25.030974291338186 25.16236523685341 30.45647112896296 19.35018934284544 47 17.659842330865384 23.576431561803705 38.78555798687089 19.97816812046002 48 20.815473157279456 23.736548664608375 32.665637520857686 22.78234065725448 49 21.25011240670244 20.141032942657596 37.41219787576311 21.19665677487685 50 20.000649460947415 22.364187724188923 34.58629337649751 23.048869438366157 51 20.06259804362379 20.493989988309703 33.0535655406013 26.3898464274652 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 130.0 1 517.0 2 904.0 3 12313.0 4 23722.0 5 15491.5 6 7261.0 7 6796.0 8 6331.0 9 6146.0 10 5961.0 11 5701.0 12 5441.0 13 5120.0 14 4799.0 15 4664.0 16 4529.0 17 4217.0 18 3905.0 19 3520.5 20 3136.0 21 2999.5 22 2863.0 23 2693.0 24 2523.0 25 2741.0 26 3067.0 27 3175.0 28 3559.0 29 3943.0 30 4171.5 31 4400.0 32 4951.5 33 5503.0 34 6105.5 35 6708.0 36 7109.5 37 7511.0 38 8141.5 39 8772.0 40 9724.5 41 10677.0 42 11575.5 43 12474.0 44 14320.5 45 16167.0 46 36550.0 47 56933.0 48 41634.5 49 26336.0 50 26495.5 51 26655.0 52 24458.0 53 22261.0 54 21499.0 55 20737.0 56 20228.5 57 19720.0 58 18577.5 59 17435.0 60 16486.0 61 15537.0 62 14105.0 63 12673.0 64 11165.5 65 9658.0 66 8311.0 67 6964.0 68 5767.0 69 4570.0 70 3816.0 71 3062.0 72 2460.0 73 1858.0 74 1445.5 75 776.5 76 520.0 77 406.0 78 292.0 79 230.5 80 169.0 81 117.0 82 65.0 83 47.0 84 29.0 85 20.5 86 12.0 87 9.0 88 6.0 89 5.5 90 5.0 91 4.0 92 3.0 93 1.5 94 0.0 95 2.5 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 400332.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.35016834204606 #Duplication Level Percentage of deduplicated Percentage of total 1 76.43126536393055 31.60445689394123 2 7.940564822940088 6.566873843190037 3 3.65584822188585 4.53509818223849 4 2.4356920366850185 4.028651029852261 5 1.861585546180251 3.8488437858836564 6 1.498246907125041 3.717165709654218 7 1.2110837307984579 3.50549613013806 8 1.0150453358697826 3.357783641041936 9 0.7957154339260599 2.9612670430686125 >10 3.068758576011708 18.32389382258176 >50 0.052572241983398965 1.4312160371885172 >100 0.025674815852357636 1.8068407336318475 >500 0.0018339154180255456 0.4870987819961626 >1k 0.003667830836051091 3.112427245832252 >5k 0.001222610278683697 4.743841640748305 >10k+ 0.001222610278683697 5.969045479012653 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12812 3.200343714716785 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCG 10802 2.69826044383162 No Hit GAATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC 9626 2.4045042614629857 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGC 9141 2.2833548155031322 No Hit GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC 2994 0.7478792602140224 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAAGCTGAT 2130 0.532058391535026 No Hit GAACTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCT 2002 0.5000849295085079 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAAGCTGATCGTA 1975 0.4933405273622893 No Hit GAATGACTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCT 1761 0.4398848955367045 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTC 1451 0.36244916719123127 No Hit GAATGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTT 895 0.22356444151354374 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATG 516 0.12889301879440065 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGT 516 0.12889301879440065 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTAT 407 0.10166561753744392 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0841801304916919 0.0 2 0.0 0.0 0.0 0.9964229689357833 0.0 3 0.0 0.0 0.0 1.1535425596754694 0.0 4 0.0 0.0 0.0 1.8287321523135798 0.0 5 0.0 0.0 0.0 4.682613430852393 0.0 6 0.0 0.0 0.0 5.1524734470389575 0.0 7 0.0 0.0 0.0 5.84290039267408 0.0 8 0.0 0.0 0.0 6.5338269236533675 0.0 9 0.0 0.0 0.0 6.707932416094642 0.0 10 0.0 0.0 0.0 9.88579479032403 0.0 11 0.0 0.0 0.0 10.337419941448598 0.0 12 0.0 0.0 0.0 13.216030694523546 0.0 13 0.0 0.0 0.0 13.56049478932486 0.0 14 0.0 0.0 0.0 13.744841781321503 0.0 15 0.0 0.0 0.0 14.403045472258025 0.0 16 0.0 0.0 0.0 14.753254798517231 0.0 17 0.0 0.0 0.0 15.062997711899124 0.0 18 0.0 0.0 0.0 15.41445600151874 0.0 19 0.0 0.0 0.0 16.184816602220156 0.0 20 0.0 0.0 0.0 16.486815942767503 0.0 21 0.0 0.0 0.0 16.697141372660692 0.0 22 0.0 0.0 0.0 17.009132420091323 0.0 23 0.0 0.0 0.0 17.233196446949034 0.0 24 0.0 0.0 0.0 17.48248953368704 0.0 25 0.0 0.0 0.0 17.64585394122878 0.0 26 0.0 0.0 0.0 17.843190152173698 0.0 27 0.0 0.0 0.0 18.084989458749238 0.0 28 0.0 0.0 0.0 18.257096609813853 0.0 29 0.0 0.0 0.0 18.44069422379425 0.0 30 0.0 0.0 0.0 18.63403375198585 0.0 31 0.0 0.0 0.0 18.835116853012 0.0 32 0.0 0.0 0.0 19.029955137236094 0.0 33 0.0 0.0 0.0 19.218548604658135 0.0 34 0.0 0.0 0.0 19.431122168600062 0.0 35 0.0 0.0 0.0 19.636201952379526 0.0 36 0.0 0.0 0.0 19.823546456441154 0.0 37 0.0 0.0 0.0 20.02313080143481 0.0 38 0.0 0.0 0.0 20.249193169669173 0.0 39 0.0 0.0 0.0 20.489493720212224 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATCGAA 30 2.1619435E-6 45.000004 42 CTTAACG 20 7.027772E-4 45.0 1 CGACCCA 20 7.027772E-4 45.0 34 CTAAGAC 20 7.027772E-4 45.0 18 CGTTAGG 25 3.8862352E-5 45.0 2 TGTTGCG 25 3.8862352E-5 45.0 1 CTACGAA 40 6.7957444E-9 45.0 11 TACGAAT 40 6.7957444E-9 45.0 12 CGAATGG 25 3.8862352E-5 45.0 2 CTCGATG 25 3.8862352E-5 45.0 1 CGATCGA 35 1.2092823E-7 45.0 41 AACAGCG 20 7.027772E-4 45.0 1 ACGACCC 20 7.027772E-4 45.0 36 CGTTTTT 6900 0.0 43.66304 1 GCGATCC 100 0.0 42.75 33 GCGATAC 75 0.0 42.0 33 CCGATGA 1390 0.0 41.92446 18 GATGAAT 1340 0.0 41.809704 20 ATGAATG 1330 0.0 41.785717 21 CGATGAA 1330 0.0 41.785717 19 >>END_MODULE