SRR3552117_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552117_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	486462
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19722	4.054170726593238	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTC	13155	2.704219445712101	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCG	9703	1.994605950721742	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGC	6788	1.3953813453054915	No Hit
GAACTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCT	4658	0.9575259732517648	No Hit
GCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC	2990	0.6146420480941985	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTATACGCTCGTA	2014	0.4140097273785003	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTATACGCT	1789	0.3677573993446559	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCT	1744	0.358506933737887	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTC	1704	0.35028429764298136	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTT	1258	0.25860190518478315	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCC	1080	0.22201117456245298	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTATACGCTCGT	622	0.1278619912757831	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATCC	20	7.029269E-4	45.000004	15
CGCTCGA	20	7.029269E-4	45.000004	41
CGCGTAA	20	7.029269E-4	45.000004	31
AGACGTT	25	3.8874765E-5	45.0	10
CGATACC	55	1.8189894E-12	45.0	34
CGTTTTT	9470	0.0	43.788277	1
CGATGAA	775	0.0	42.67742	19
ACCACCG	1035	0.0	42.391304	14
CCGATGA	780	0.0	42.115383	18
TGAATGA	815	0.0	41.687115	22
ATGAATG	795	0.0	41.320755	21
GATGAAT	815	0.0	40.58282	20
CGAACAC	50	1.0786607E-9	40.5	34
GATACCT	1275	0.0	40.411762	5
TGATACC	1280	0.0	40.07813	4
CCACCGA	1015	0.0	39.901478	15
AATCTGT	1745	0.0	39.584526	2
TCTACGG	40	3.452733E-7	39.375004	2
CCGGTGA	40	3.452733E-7	39.375004	18
TACGGCT	800	0.0	39.375	7