SRR3552112_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552112_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	353894
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTC	19420	5.487518861580021	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17965	5.076378802692331	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGC	10030	2.8341819866965814	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCG	9296	2.6267752490858847	No Hit
GAACTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCT	3866	1.0924175035462595	No Hit
GCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC	3534	0.9986041017931923	TruSeq Adapter, Index 15 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTC	2068	0.5843557675462143	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCT	2062	0.5826603446229662	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTT	1969	0.5563812893126191	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACAGGTATCGTA	908	0.2565740023848949	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACAGGTAT	771	0.21786184563739425	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACAGGGATCGTATGC	571	0.16134774819578743	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTT	446	0.1260264372947832	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTAT	421	0.11896217511458233	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCC	412	0.11641904072971002	No Hit
CGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTG	409	0.11557132926808591	TruSeq Adapter, Index 21 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCCGTC	65	0.0	45.000004	17
GGTACTC	20	7.026662E-4	45.0	8
GATACCC	25	3.8853148E-5	45.0	5
TTGCTAG	20	7.026662E-4	45.0	1
TGGTTAC	20	7.026662E-4	45.0	29
GCCGATG	20	7.026662E-4	45.0	9
GTCCGTC	20	7.026662E-4	45.0	44
CGTCCGT	20	7.026662E-4	45.0	43
CACCCGT	60	0.0	44.999996	16
CGTTTTT	8455	0.0	44.148434	1
TACGGCT	1310	0.0	43.454197	7
ACGGCTG	1350	0.0	42.333332	8
TGATACC	1000	0.0	42.3	4
GAATCTG	2620	0.0	41.994274	1
GATACCT	980	0.0	41.785713	5
AATCTGT	2660	0.0	41.70113	2
CGGCTGT	1390	0.0	41.11511	9
GAATGAT	3360	0.0	40.982143	1
AATGATC	280	0.0	40.982143	2
TCAAGCG	150	0.0	40.5	17