SRR3552109_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552109_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	513022
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTC	19699	3.8397963440164355	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCG	19268	3.7557843523279706	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17326	3.377243081193399	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGC	14445	2.8156687237584355	No Hit
GAACTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCT	6366	1.2408824572825337	No Hit
GCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	5918	1.1535567675460312	TruSeq Adapter, Index 22 (95% over 23bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATTCGTCCT	3076	0.5995844232800932	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATTCGTCCTCGTA	2247	0.4379929125846455	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTC	2017	0.39316052722885175	No Hit
GAATGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTT	1998	0.389456982351634	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCT	1890	0.36840525357587006	No Hit
GAATGCTGCCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTT	1122	0.21870407117043716	No Hit
GAACTGTCCCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCT	1064	0.2073985131241935	TruSeq Adapter, Index 22 (95% over 21bp)
GAATCTTTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTC	1053	0.20525435556369903	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCATTCGTCCTCGT	725	0.1413194755780454	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATG	699	0.1362514667986948	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTAT	599	0.11675912533965405	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATG	30	2.1631422E-6	45.000004	1
ACGTCGG	25	3.8877748E-5	45.000004	2
GCATATT	30	2.1631422E-6	45.000004	27
GCTTGCG	35	1.2101737E-7	45.0	1
TACGCAG	20	7.0296315E-4	45.0	1
TTCGAAT	20	7.0296315E-4	45.0	16
CGTTTTT	8945	0.0	44.019005	1
TACGGCT	1730	0.0	43.049133	7
ACGGCTG	1725	0.0	43.04348	8
CCATTCG	80	0.0	42.1875	41
GATACCT	2285	0.0	42.04595	5
TCAAGCG	140	0.0	41.785713	17
TGATACC	2305	0.0	41.583515	4
ATACCTG	2340	0.0	41.346157	6
CGGCTGT	1780	0.0	40.82865	9
TACCTGT	2410	0.0	40.518673	7
AATTCGA	50	1.0786607E-9	40.500004	13
AAGTGCG	50	1.0786607E-9	40.500004	12
CACCGGT	195	0.0	40.384617	16
GACACGA	145	0.0	40.34483	25