SRR3552098_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552098_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	269297
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTC	10044	3.7297110625071945	Illumina PCR Primer Index 9 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7230	2.6847681184714274	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCG	7074	2.62683951176582	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGC	5617	2.085801178624344	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTCT	2502	0.9290857306245521	Illumina PCR Primer Index 9 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTCTGC	1816	0.6743483960088675	Illumina PCR Primer Index 9 (95% over 24bp)
GAATGACTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCT	1305	0.48459507532575563	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTC	1244	0.46194350475497314	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTT	1014	0.37653594358644915	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCAGAACTCGTA	774	0.28741501019320675	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGCAGAACTCGT	288	0.10694512007189089	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCAGAACT	288	0.10694512007189089	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCAAGCG	25	3.8828235E-5	45.000004	1
GGTACCT	55	1.8189894E-12	45.0	8
GCGTTTG	20	7.023656E-4	45.0	1
AACAGCG	20	7.023656E-4	45.0	1
GCGTATG	20	7.023656E-4	45.0	1
GCGTAAG	20	7.023656E-4	45.0	1
TGGTCGG	20	7.023656E-4	45.0	2
CGTTTTT	4650	0.0	44.322582	1
GAATCTG	1355	0.0	42.509224	1
AATCTGT	1340	0.0	42.31343	2
TACGGCT	610	0.0	42.049183	7
ATGGGCG	60	3.6379788E-12	41.249996	5
AGTAGCA	60	3.6379788E-12	41.249996	28
TACCGGG	55	6.002665E-11	40.909092	3
TGCCAGT	50	1.0750227E-9	40.500004	24
AGGGTAC	50	1.0750227E-9	40.500004	6
GTTAAGG	45	1.918852E-8	40.0	2
GATACCT	840	0.0	39.910713	5
TGATACC	860	0.0	39.76744	4
ACGGCTG	655	0.0	39.160305	8