SRR3552096_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552096_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	495035
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTC	23180	4.682497197167877	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCG	17063	3.4468269920308665	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12365	2.497803185633339	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGC	11677	2.358823113517226	No Hit
GAACTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCT	5454	1.101740280990233	Illumina PCR Primer Index 5 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGC	3835	0.7746926984960659	Illumina PCR Primer Index 5 (95% over 23bp)
GAATGACTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCT	3143	0.6349046027048593	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTC	2908	0.5874332117931055	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTT	2370	0.4787540274930055	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACTGAACTCGTA	1765	0.3565404466350864	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCC	818	0.1652408415566576	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCACTGAACTCGT	530	0.10706313694991262	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATG	508	0.10261900673689739	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCACTGAACT	508	0.10261900673689739	No Hit
CTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGCT	496	0.10019493571161635	Illumina PCR Primer Index 5 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	8100	0.0	43.75	1
TACGGCT	1545	0.0	42.37864	7
GATACCT	1955	0.0	42.007675	5
ACGGCTG	1565	0.0	41.98083	8
GAATCTG	2860	0.0	41.774475	1
TGATACC	2005	0.0	41.29676	4
CGGCTGT	1615	0.0	41.09907	9
AATCTGT	2925	0.0	40.692307	2
CGCACGA	50	1.0786607E-9	40.5	39
GAATGAT	4730	0.0	40.433407	1
ATACCTG	2055	0.0	40.182484	6
ATGATAC	4590	0.0	40.049015	3
CGGGCTA	45	1.9244908E-8	40.0	6
AATGATA	4615	0.0	39.73456	2
ATACGGC	2625	0.0	38.82857	6
CTACGGG	70	0.0	38.57143	3
TAGGGCG	70	0.0	38.57143	5
TACCTGT	2160	0.0	38.229164	7
TGATACG	2680	0.0	37.947758	4
GTTTTTT	9490	0.0	37.83983	2