##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552096_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 495035 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.468708273152405 28.0 25.0 31.0 16.0 33.0 2 27.448790489561343 30.0 25.0 31.0 16.0 33.0 3 27.626060783580957 30.0 25.0 33.0 16.0 33.0 4 30.67325744644318 33.0 28.0 35.0 19.0 37.0 5 31.695809387215046 33.0 30.0 35.0 26.0 35.0 6 31.99463270273819 35.0 32.0 35.0 25.0 36.0 7 33.05183875887563 35.0 32.0 35.0 28.0 37.0 8 33.687153433595604 35.0 33.0 35.0 30.0 37.0 9 34.854511297181006 37.0 34.0 39.0 29.0 39.0 10 35.24348581413435 37.0 34.0 39.0 30.0 39.0 11 35.587221105578394 37.0 34.0 39.0 31.0 39.0 12 34.61819669316311 37.0 33.0 39.0 28.0 39.0 13 35.166636702455385 37.0 34.0 39.0 30.0 39.0 14 36.54409890209783 38.0 35.0 40.0 32.0 41.0 15 36.4015150443908 38.0 35.0 40.0 30.0 41.0 16 36.68673124122537 38.0 35.0 40.0 31.0 41.0 17 35.311268900178774 37.0 33.0 40.0 27.0 41.0 18 34.9943175735049 37.0 33.0 39.0 27.0 40.0 19 34.67772379730726 37.0 33.0 39.0 27.0 40.0 20 34.82874342218227 36.0 34.0 39.0 27.0 40.0 21 35.66107244942277 37.0 34.0 39.0 30.0 40.0 22 36.256054622400434 38.0 35.0 39.0 31.0 40.0 23 36.31021846940116 38.0 35.0 40.0 31.0 41.0 24 36.35593846899714 38.0 35.0 40.0 31.0 41.0 25 35.70360277556132 37.0 35.0 40.0 30.0 41.0 26 35.7070489965356 37.0 35.0 40.0 30.0 41.0 27 36.25338612421344 38.0 35.0 40.0 31.0 41.0 28 36.160998717262416 38.0 35.0 40.0 31.0 41.0 29 36.23771248497581 38.0 35.0 40.0 31.0 41.0 30 35.92878079327724 38.0 35.0 40.0 30.0 41.0 31 35.76019271364651 38.0 35.0 40.0 30.0 41.0 32 35.402716979607504 38.0 35.0 40.0 27.0 41.0 33 34.86421162140051 38.0 34.0 40.0 23.0 41.0 34 33.98011049723757 38.0 33.0 40.0 18.0 41.0 35 33.827153635601526 38.0 33.0 40.0 16.0 41.0 36 33.74218186592867 38.0 34.0 40.0 15.0 41.0 37 33.56911935519711 38.0 33.0 40.0 15.0 41.0 38 33.565901400911045 38.0 33.0 40.0 15.0 41.0 39 32.90871352530629 37.0 33.0 40.0 12.0 40.0 40 32.71121839869908 37.0 32.0 40.0 10.0 40.0 41 32.474877533911744 37.0 31.0 40.0 10.0 41.0 42 32.724730574605836 37.0 32.0 40.0 10.0 41.0 43 32.845017018998654 37.0 33.0 40.0 10.0 41.0 44 32.660040199177836 37.0 32.0 40.0 10.0 40.0 45 32.70253416425101 37.0 32.0 40.0 10.0 40.0 46 32.29662145100851 36.0 31.0 39.0 10.0 40.0 47 32.26862747078489 36.0 31.0 39.0 10.0 40.0 48 32.37737735715656 36.0 31.0 39.0 10.0 40.0 49 32.29702344278687 36.0 31.0 39.0 10.0 40.0 50 32.22989485591928 36.0 31.0 39.0 10.0 40.0 51 29.588182653751755 34.0 26.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 8.0 9 9.0 10 14.0 11 13.0 12 15.0 13 27.0 14 41.0 15 78.0 16 175.0 17 350.0 18 626.0 19 1135.0 20 1659.0 21 2301.0 22 3508.0 23 5007.0 24 7499.0 25 11778.0 26 15430.0 27 16261.0 28 15122.0 29 14361.0 30 15672.0 31 18909.0 32 25030.0 33 33601.0 34 44437.0 35 64252.0 36 79426.0 37 75931.0 38 38711.0 39 3649.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.52338723524599 12.622339834557152 15.991798559697799 27.862474370499058 2 36.91880372094902 32.590018887553406 18.078923712464775 12.412253679032796 3 22.545880594301412 31.772702940196147 34.10809336713566 11.573323098366782 4 19.88768470916198 17.63612673851344 48.44223135737877 14.033957194945812 5 27.14818144171624 20.22806468229519 34.667447756219254 17.95630611976931 6 18.49263183411274 33.31037199389942 36.948498591008715 11.248497580979123 7 60.43754482006322 3.5785348510711366 32.37165048935934 3.6122698395062978 8 56.43802963426828 11.089720928823214 26.886583776904665 5.585665660003838 9 52.35286393891341 4.386356520246043 25.198218307796417 18.06256123304413 10 29.313078873210983 19.631541204157283 33.84003151292333 17.215348409708405 11 21.86168654741584 18.221135879281263 39.572959487712986 20.344218085589908 12 19.464280303412888 16.181280111507267 44.67987112022382 19.67456846485602 13 17.225650711565848 17.942569717292717 50.504307776217836 14.327471794923591 14 16.54165867059905 24.436655994020626 39.61942084903088 19.40226448634945 15 14.073954366862948 19.403072510024543 50.6186431262436 15.904329996868908 16 16.048966234710676 23.11573929116123 37.408466068055795 23.426828406072296 17 16.465906451059016 20.21917642186916 41.791186481763916 21.523730645307907 18 17.342814144454433 21.94774106881332 40.22463058167604 20.48481420505621 19 16.65700405021867 23.608431727049602 36.43802963426828 23.29653458846344 20 17.953882048744028 23.61125980991243 42.386901936226735 16.047956205116808 21 18.654236569131474 25.38325572939287 39.49215712020362 16.47035058127203 22 17.211308291332937 18.03428040441585 38.75140141606149 26.003009888189727 23 17.660165442847475 25.28265678184371 40.09979092387407 16.957386851434748 24 22.11682002282667 19.256820224832587 35.6566707404527 22.969689011888047 25 16.160675507792376 30.095851808457986 34.47493611562818 19.268536568121448 26 17.70400072722131 19.30065550920642 37.73692769198138 25.2584160715909 27 21.988950276243095 21.80209480137768 33.51096387124143 22.697991051137798 28 15.14014160614906 19.599220257153537 40.13736402476592 25.123274111931483 29 20.329269647600675 18.995020554102236 34.214752492248024 26.460957306049064 30 17.742785863625805 27.333420869231468 35.95220539961821 18.97158786752452 31 19.159857383821347 20.40178977244033 32.950599452563964 27.487753391174362 32 21.11446665387296 23.530457442403062 37.101417071520196 18.253658832203783 33 22.20428858565556 21.14577757128284 31.217388669488017 25.432545173573583 34 20.315533245124083 27.097073944266565 30.90387548355167 21.683517327057682 35 17.585221246982535 31.778359105921805 29.332067429575687 21.304352217519973 36 18.994414536345914 24.033856191986423 27.46129061581504 29.510438655852617 37 17.75510822467098 26.260971446463383 36.29278737867019 19.691132950195442 38 22.224085165695353 23.87043340369873 27.550173220075347 26.35530821053057 39 23.525407294433727 24.54270910137667 31.794519579423675 20.137364024765926 40 22.648701606957083 26.512064803498742 32.593048976335005 18.246184613209167 41 18.11306271273748 30.021109618511822 27.813386932237115 24.05244073651358 42 19.908087306958095 24.90005757168685 35.821709576090576 19.370145545264474 43 24.31949256113204 21.15405981395255 28.2755764743907 26.250871150524713 44 22.509519528922198 21.64695425575969 30.678436878200532 25.16508933711758 45 19.93333804680477 20.237558960477543 31.64867130606927 28.180431686648415 46 26.250871150524713 24.03486622158029 29.363782358823116 20.350480269071884 47 17.89550233821851 21.08961992586383 40.61126991020837 20.403607825709294 48 21.52029654468876 23.02928075792621 30.27684911167897 25.17357358570606 49 18.51687254436555 20.160998717262416 38.82412354681992 22.49800519155211 50 19.924651792297514 19.72830203924975 35.63121799468724 24.71582817376549 51 20.50440877917723 19.37337763996485 30.596220469259748 29.52599311159817 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 80.0 1 299.0 2 518.0 3 10848.5 4 21179.0 5 14828.0 6 8477.0 7 7934.0 8 7391.0 9 7246.5 10 7102.0 11 6982.0 12 6862.0 13 6570.5 14 6279.0 15 5861.0 16 5443.0 17 5157.0 18 4871.0 19 4430.0 20 3989.0 21 3865.5 22 3742.0 23 3562.5 24 3383.0 25 3440.0 26 3659.0 27 3821.0 28 4182.0 29 4543.0 30 5124.0 31 5705.0 32 6321.5 33 6938.0 34 7728.0 35 8518.0 36 9335.0 37 10152.0 38 11261.5 39 12371.0 40 13375.0 41 14379.0 42 15569.5 43 16760.0 44 19447.5 45 22135.0 46 59139.0 47 96143.0 48 66700.5 49 37258.0 50 35890.5 51 34523.0 52 30381.0 53 26239.0 54 24125.0 55 22011.0 56 20212.0 57 18413.0 58 16986.5 59 15560.0 60 14734.0 61 13908.0 62 12920.0 63 11932.0 64 10639.0 65 9346.0 66 8178.0 67 7010.0 68 6074.5 69 5139.0 70 4314.5 71 3490.0 72 2875.5 73 2261.0 74 1937.5 75 1296.5 76 979.0 77 757.5 78 536.0 79 397.5 80 259.0 81 194.5 82 130.0 83 99.5 84 69.0 85 54.5 86 40.0 87 26.5 88 13.0 89 12.0 90 11.0 91 10.0 92 9.0 93 4.5 94 0.0 95 1.0 96 2.0 97 2.5 98 3.0 99 2.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 495035.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.24392845838004 #Duplication Level Percentage of deduplicated Percentage of total 1 75.63955000981105 34.222303892679506 2 9.679621591212015 8.758882135539743 3 4.852405422398555 6.586256513461669 4 3.0129656321782905 5.452736060393295 5 1.9835460380188157 4.487170751901323 6 1.4298469820673165 3.8815136737850566 7 0.9662485363418016 3.060181575588403 8 0.6577920112523993 2.380887575807798 9 0.46675178989663507 1.9005916130913767 >10 1.2398558429474338 8.139225327428582 >50 0.04303280464319967 1.3311910996074927 >100 0.02197419811549401 1.9606433715268883 >500 0.0018311831762911678 0.4896430308778327 >1k 0.0022889789703639594 2.9040968426134057 >5k 4.5779579407279194E-4 1.129658667685152 >10k+ 0.0018311831762911678 13.315017868012466 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTC 23180 4.682497197167877 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCG 17063 3.4468269920308665 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12365 2.497803185633339 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGC 11677 2.358823113517226 No Hit GAACTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCT 5454 1.101740280990233 Illumina PCR Primer Index 5 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGC 3835 0.7746926984960659 Illumina PCR Primer Index 5 (95% over 23bp) GAATGACTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCT 3143 0.6349046027048593 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTC 2908 0.5874332117931055 No Hit GAATGCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTT 2370 0.4787540274930055 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACTGAACTCGTA 1765 0.3565404466350864 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCC 818 0.1652408415566576 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCACTGAACTCGT 530 0.10706313694991262 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATG 508 0.10261900673689739 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCACTGAACT 508 0.10261900673689739 No Hit CTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGCT 496 0.10019493571161635 Illumina PCR Primer Index 5 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.0200591877342006E-4 0.0 0.0 0.12120355126405204 0.0 2 2.0200591877342006E-4 0.0 0.0 1.1227488965426686 0.0 3 2.0200591877342006E-4 0.0 0.0 1.3732362358217096 0.0 4 2.0200591877342006E-4 0.0 0.0 2.8620198571818154 0.0 5 2.0200591877342006E-4 0.0 0.0 8.843415112062784 0.0 6 2.0200591877342006E-4 0.0 0.0 10.004141121334856 0.0 7 2.0200591877342006E-4 0.0 0.0 11.231529083802155 0.0 8 2.0200591877342006E-4 0.0 0.0 12.55608189319947 0.0 9 2.0200591877342006E-4 0.0 0.0 12.963123819527912 0.0 10 2.0200591877342006E-4 0.0 0.0 17.362206712656683 0.0 11 2.0200591877342006E-4 0.0 0.0 18.16316018059329 0.0 12 2.0200591877342006E-4 0.0 0.0 21.41000131303847 0.0 13 2.0200591877342006E-4 0.0 0.0 21.848556162695566 0.0 14 2.0200591877342006E-4 0.0 0.0 22.099447513812155 0.0 15 2.0200591877342006E-4 0.0 0.0 22.676982435585362 0.0 16 2.0200591877342006E-4 0.0 0.0 23.088064480289272 0.0 17 2.0200591877342006E-4 0.0 0.0 23.510054844606948 0.0 18 2.0200591877342006E-4 0.0 0.0 23.94214550486329 0.0 19 2.0200591877342006E-4 0.0 0.0 24.32292666175119 0.0 20 2.0200591877342006E-4 0.0 0.0 24.605734948033977 0.0 21 2.0200591877342006E-4 0.0 0.0 24.882685062672337 0.0 22 2.0200591877342006E-4 0.0 0.0 25.239225509307424 0.0 23 2.0200591877342006E-4 0.0 0.0 25.51294352924541 0.0 24 2.0200591877342006E-4 0.0 0.0 25.74646237134748 0.0 25 2.0200591877342006E-4 0.0 0.0 25.95432646176533 0.0 26 2.0200591877342006E-4 0.0 0.0 26.165422646883552 0.0 27 2.0200591877342006E-4 0.0 0.0 26.390659246315916 0.0 28 2.0200591877342006E-4 0.0 0.0 26.605997555728383 0.0 29 2.0200591877342006E-4 0.0 0.0 26.825779995353862 0.0 30 2.0200591877342006E-4 0.0 0.0 27.08434757138384 0.0 31 2.0200591877342006E-4 0.0 0.0 27.309786176734978 0.0 32 4.040118375468401E-4 0.0 0.0 27.550577231912897 0.0 33 4.040118375468401E-4 0.0 0.0 27.777429878695447 0.0 34 4.040118375468401E-4 0.0 0.0 28.001858454452716 0.0 35 4.040118375468401E-4 0.0 0.0 28.226287030209985 0.0 36 4.040118375468401E-4 0.0 0.0 28.43697920349066 0.0 37 4.040118375468401E-4 0.0 0.0 28.657367660872463 0.0 38 4.040118375468401E-4 0.0 0.0 28.88523033724888 0.0 39 4.040118375468401E-4 0.0 0.0 29.123597321401515 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 8100 0.0 43.75 1 TACGGCT 1545 0.0 42.37864 7 GATACCT 1955 0.0 42.007675 5 ACGGCTG 1565 0.0 41.98083 8 GAATCTG 2860 0.0 41.774475 1 TGATACC 2005 0.0 41.29676 4 CGGCTGT 1615 0.0 41.09907 9 AATCTGT 2925 0.0 40.692307 2 CGCACGA 50 1.0786607E-9 40.5 39 GAATGAT 4730 0.0 40.433407 1 ATACCTG 2055 0.0 40.182484 6 ATGATAC 4590 0.0 40.049015 3 CGGGCTA 45 1.9244908E-8 40.0 6 AATGATA 4615 0.0 39.73456 2 ATACGGC 2625 0.0 38.82857 6 CTACGGG 70 0.0 38.57143 3 TAGGGCG 70 0.0 38.57143 5 TACCTGT 2160 0.0 38.229164 7 TGATACG 2680 0.0 37.947758 4 GTTTTTT 9490 0.0 37.83983 2 >>END_MODULE