SRR3552094_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552094_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	478464
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTC	29856	6.239967897271268	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCG	23326	4.875183921883361	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15556	3.251237292669877	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGC	14822	3.097829721776351	No Hit
GAACTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCT	6120	1.2790930979133226	No Hit
GCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	4872	1.0182584269662922	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCT	3756	0.7850120385232745	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTC	3156	0.6596107544141252	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTT	3134	0.6550127073301231	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGATTACGTCGTA	1689	0.35300461476725525	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCC	582	0.1216392455858748	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGATTACGT	579	0.12101223916532906	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATG	560	0.11704119850187267	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCGATTACGTCGT	541	0.11307015783841626	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCGATTACGTCGTAT	532	0.11118913857677902	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGAGC	45	3.8380676E-10	45.000004	15
TACGGGT	25	3.8873804E-5	45.0	4
ACGGGAC	40	6.8012014E-9	45.0	5
TTAACGG	20	7.029155E-4	45.0	2
CGTTTTT	8595	0.0	44.109947	1
GAATCTG	3720	0.0	42.338707	1
TACGGCT	1720	0.0	42.252907	7
TGATACC	2775	0.0	42.243244	4
AATCTGT	3745	0.0	42.236317	2
GATACCT	2770	0.0	41.913357	5
CACCCGT	65	0.0	41.53846	16
ACGGCTG	1750	0.0	41.528572	8
ATACCTG	2805	0.0	41.470585	6
GAATGAC	470	0.0	40.69149	1
TACCTGT	2880	0.0	40.54688	7
ACAACGA	50	1.0786607E-9	40.5	13
AGCGACT	50	1.0786607E-9	40.5	19
CGGCTGT	1820	0.0	40.054943	9
ATGATAC	5700	0.0	39.986843	3
GAATGAT	5860	0.0	39.893345	1