SRR3552093_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552093_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	572245
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTC	27578	4.819264475880086	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCG	26098	4.560633994180814	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGC	21455	3.749268233012084	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12292	2.148031000707739	No Hit
GAACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCT	7358	1.2858128948265166	No Hit
GCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	6440	1.1253920960427788	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACATCCGTT	4516	0.789172469833725	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACATCCGTTCGTA	4075	0.7121075763003608	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCT	3671	0.6415084448094786	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTC	3340	0.5836660870780872	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTT	2418	0.4225462869924595	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATG	1258	0.21983590944438133	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACATCCGTTCGT	1105	0.1930991096470917	No Hit
GAATCTTTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTC	1098	0.19187585736878435	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTAT	936	0.1635663046422424	No Hit
GAATGCTGCCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTT	915	0.1598965478073203	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCACATCCGT	779	0.13613050354306283	No Hit
GAACTGTCCCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCT	765	0.13368399898644812	No Hit
CTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGCT	607	0.10607344756179608	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCC	590	0.1031026920287639	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	40	6.8048394E-9	45.0	6
GCAAACG	20	7.0303143E-4	45.0	1
TCGATCA	25	3.8883423E-5	45.0	17
TCGGCGT	40	6.8048394E-9	45.0	4
ATCGTAG	20	7.0303143E-4	45.0	1
GGTATCG	20	7.0303143E-4	45.0	1
CTCGATC	25	3.8883423E-5	45.0	16
CGTTTTT	6760	0.0	43.668636	1
GATACCT	3160	0.0	42.365505	5
TACGGCT	2445	0.0	42.331287	7
TGATACC	3165	0.0	42.22749	4
CGCGAGG	65	0.0	41.538464	2
ACGGCTG	2510	0.0	41.3247	8
CGGCTGT	2515	0.0	41.15308	9
GAATCTG	3200	0.0	41.0625	1
ATACCTG	3290	0.0	41.033436	6
GGCGACT	510	0.0	40.588234	10
ATGATAC	8460	0.0	40.50532	3
CGTTAGG	50	1.0786607E-9	40.5	2
ATACGAA	50	1.0786607E-9	40.5	19

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content