SRR3552092_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552092_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	633827
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTC	39160	6.178342039704841	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCG	31198	4.922163303235741	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGC	21594	3.4069233402805494	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14997	2.366103053356831	No Hit
GAACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCT	9047	1.4273610938000432	No Hit
GCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	7380	1.164355573366234	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCT	5230	0.8251462938625208	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTC	4615	0.728116662748668	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTT	3348	0.5282198454783403	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACATCCGTTCGTA	3044	0.4802572310740943	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATG	880	0.13883914695965935	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACATCCGTT	842	0.1328438201591286	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTAT	810	0.12779512390605008	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCC	787	0.12416637347414988	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACATCCGTTCGT	731	0.11533115503126247	No Hit
CTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGCT	657	0.10365604494601839	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATAC	20	7.0308894E-4	45.0	3
CGTTTTT	8575	0.0	43.9242	1
TACGGCT	2340	0.0	42.5	7
TGATACC	3630	0.0	42.45868	4
GAATCTG	4690	0.0	42.457355	1
AATCTGT	4700	0.0	42.17553	2
ACGGCTG	2380	0.0	42.06933	8
GATACCT	3665	0.0	42.053207	5
GAATGAC	690	0.0	41.739132	1
TATGGGC	180	0.0	41.25	4
TAGGGCG	120	0.0	41.249996	5
ATACCTG	3785	0.0	40.83884	6
GAATGAT	7965	0.0	40.70622	1
ATGATAC	7675	0.0	40.66124	3
CGGCTGT	2470	0.0	40.536438	9
ACCTTAC	50	1.0804797E-9	40.500004	36
AATGATA	7760	0.0	40.215847	2
GACGCTA	45	1.925946E-8	40.0	40
TACCTGT	3900	0.0	39.750004	7
GGCGACT	410	0.0	39.512196	10