##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552091_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 350543 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.62149864638575 28.0 16.0 31.0 16.0 33.0 2 26.021275563910848 28.0 23.0 31.0 16.0 33.0 3 26.207058763118933 30.0 23.0 31.0 16.0 33.0 4 29.545339658757985 33.0 26.0 35.0 19.0 37.0 5 31.496638072932566 33.0 29.0 35.0 25.0 37.0 6 30.1478049768502 33.0 28.0 35.0 17.0 37.0 7 31.89945313413761 33.0 31.0 35.0 28.0 35.0 8 32.26489760172076 35.0 32.0 35.0 25.0 37.0 9 34.027003819788156 35.0 32.0 37.0 28.0 39.0 10 33.72024830049381 35.0 32.0 39.0 27.0 39.0 11 34.435413059168205 35.0 32.0 39.0 27.0 39.0 12 34.53938318551504 37.0 33.0 39.0 27.0 39.0 13 34.72311528114953 37.0 33.0 39.0 27.0 39.0 14 35.214746835623586 37.0 34.0 39.0 27.0 41.0 15 35.34035767366628 37.0 33.0 40.0 27.0 41.0 16 35.076130460457065 37.0 32.0 40.0 27.0 41.0 17 34.079545162790296 36.0 32.0 39.0 25.0 41.0 18 34.223715778092846 36.0 32.0 39.0 27.0 40.0 19 33.695646468478905 36.0 32.0 38.0 25.0 40.0 20 33.483047728809304 35.0 31.0 38.0 25.0 40.0 21 34.79798198794442 36.0 33.0 39.0 27.0 40.0 22 35.557024387878236 37.0 34.0 39.0 30.0 40.0 23 35.860621949375684 37.0 34.0 40.0 30.0 40.0 24 35.358209977092685 37.0 34.0 39.0 30.0 40.0 25 34.30946845322828 36.0 33.0 39.0 25.0 40.0 26 34.7367626796142 36.0 33.0 39.0 27.0 40.0 27 35.290041449979036 37.0 34.0 39.0 30.0 40.0 28 35.10721937109 37.0 34.0 39.0 27.0 40.0 29 35.4406420895582 38.0 34.0 40.0 27.0 40.0 30 34.44298987570712 37.0 33.0 39.0 25.0 40.0 31 34.57653411992252 36.0 33.0 39.0 25.0 40.0 32 34.474874694402686 37.0 33.0 39.0 25.0 40.0 33 34.17906790322443 37.0 33.0 39.0 23.0 40.0 34 34.379137509520945 38.0 34.0 40.0 22.0 40.0 35 34.34282527393216 38.0 34.0 40.0 20.0 41.0 36 33.980798361399316 38.0 33.0 40.0 18.0 41.0 37 34.24182482605558 38.0 34.0 40.0 18.0 40.0 38 33.806722713048046 37.0 33.0 40.0 18.0 40.0 39 33.869368379913446 37.0 34.0 40.0 18.0 40.0 40 33.20245733048442 37.0 33.0 40.0 16.0 40.0 41 32.99849947082098 36.0 32.0 39.0 16.0 40.0 42 33.55639393740568 37.0 33.0 40.0 17.0 40.0 43 33.61585882473762 37.0 33.0 40.0 17.0 40.0 44 34.00916863266418 38.0 34.0 40.0 18.0 40.0 45 34.059653166658585 38.0 34.0 40.0 18.0 40.0 46 33.82071529027822 37.0 34.0 40.0 18.0 40.0 47 33.6550608627187 37.0 33.0 40.0 19.0 40.0 48 33.624117440656356 37.0 33.0 40.0 18.0 40.0 49 33.774980530205994 37.0 34.0 40.0 18.0 40.0 50 33.67030863545985 37.0 33.0 40.0 18.0 40.0 51 32.286019118909806 35.0 31.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 6.0 11 6.0 12 7.0 13 11.0 14 13.0 15 28.0 16 63.0 17 183.0 18 351.0 19 722.0 20 1200.0 21 1736.0 22 2594.0 23 3701.0 24 5437.0 25 7538.0 26 9051.0 27 9520.0 28 9454.0 29 10470.0 30 13370.0 31 17808.0 32 23671.0 33 29782.0 34 40771.0 35 57002.0 36 57850.0 37 37274.0 38 10452.0 39 469.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.05670916264196 13.014380546751752 17.155099374399146 22.77381091620714 2 30.949127496484024 37.9288703525673 18.33155989422125 12.790442256727419 3 19.926228736560137 36.76553233126892 31.232117029865098 12.076121902305852 4 18.779721745976953 16.619073836875934 52.1131501698793 12.48805424726781 5 33.633534259705655 18.99595769991128 30.868680875099493 16.501827165283576 6 16.886373426369946 38.84145454337985 32.58658709487852 11.685584935371693 7 57.06489646063393 2.4573304844198858 36.82144558584824 3.656327469097943 8 52.47829795488713 17.905649235614458 22.937556876046592 6.678495933451817 9 48.92980319104932 3.264934687042674 21.412209058517785 26.393053063390226 10 34.32417706244312 14.817012463520882 30.96167945159367 19.897131022442323 11 25.598571359291157 16.24964697626254 36.743281138120004 21.4085005263263 12 20.16443061193634 12.597313311063122 42.274128994160485 24.96412708284005 13 19.02534068573613 15.642018240272948 50.775511135581084 14.557129938409838 14 16.619073836875934 24.712802708940128 36.464570680344494 22.203552773839444 15 11.721529170458403 17.325121311793417 51.9879158904899 18.96543362725828 16 13.376105071275134 20.241453972836428 34.47537106717293 31.907069888715505 17 14.933118048285088 20.481652750161892 41.85535012822964 22.729879073323385 18 14.981043695067367 20.33217037567431 39.777431014169444 24.909354915088876 19 15.1530625344109 23.1032997378353 34.53156959345929 27.21206813429451 20 17.638634917827485 21.00854959305991 44.41395206864778 16.938863420464823 21 18.55293073888225 28.127219770470386 35.75424412982145 17.56560536082592 22 15.720467959708223 16.800791914258735 38.994645450058904 28.48409467597413 23 17.862858479558856 26.464370990149565 36.841699877047894 18.831070653243682 24 21.76851342060746 18.993675526254982 31.66744165480412 27.570369398333444 25 14.636435472966228 32.29475413857929 30.997908958387416 22.070901430067067 26 16.10444367738052 17.504271943812885 39.28590786294406 27.105376515862535 27 22.712477499194108 21.411353243396672 30.88265918874432 24.9935100686649 28 14.148050310518254 19.227313054318586 43.176443403519684 23.44819323164348 29 22.44546318140713 15.08802058520638 37.58169468510283 24.88482154828366 30 21.44216258775671 25.053987670556822 35.88860710383605 17.61524263785042 31 20.756654675745914 17.03557052915049 34.92752672282716 27.280248072276443 32 23.494121976476496 23.827034058589103 30.399123645315978 22.27972031961842 33 19.77646109036552 22.208687664566114 28.227920683054574 29.78693056201379 34 21.76509016012301 18.023751722327933 35.72999603472327 24.48116208282579 35 24.505124906216928 18.918649067304155 32.698698875744206 23.877527150734718 36 24.82976410882545 19.26154565916307 37.03226137734886 18.876428854662624 37 23.031411267661884 18.141283665627327 33.651506377249014 25.175798689461775 38 20.254576471360146 26.13973178754104 30.558019986135793 23.047671754963016 39 23.441061438967544 19.149719150004422 27.986866090607997 29.422353320420036 40 19.52171345598115 23.507815018414288 36.73757570397925 20.232895821625306 41 24.817212153715808 22.89961573901062 27.098815266600674 25.1843568406729 42 19.82067820495631 18.22315664554705 41.305916820475666 20.650248329020975 43 28.419623270183685 18.59714785347304 28.20481367478455 24.778415201558722 44 24.34223476149859 17.709382301172752 31.88624505410178 26.062137883226878 45 18.95887237799642 16.816767129852828 34.20493348890151 30.019427003249245 46 28.83554941904417 22.92215220386657 28.328621595638765 19.913676781450494 47 16.84814701762694 19.102364046636218 43.57867651044237 20.470812425294472 48 23.44020562384643 21.03565040522846 28.674656176275093 26.849487794650013 49 18.80853418838773 16.500971350162462 40.51371729003289 24.176777171416916 50 22.473419808696793 16.253355508454025 34.072567416836165 27.20065726601301 51 21.532878990594593 16.3149741971741 30.621350305098087 31.530796507133218 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 45.0 1 172.5 2 300.0 3 6443.5 4 12587.0 5 8563.5 6 4540.0 7 4340.0 8 4140.0 9 4077.5 10 4015.0 11 3838.0 12 3661.0 13 3393.0 14 3125.0 15 2915.5 16 2706.0 17 2511.0 18 2316.0 19 2205.0 20 2094.0 21 1948.0 22 1802.0 23 1726.0 24 1650.0 25 1700.0 26 1820.0 27 1890.0 28 1935.5 29 1981.0 30 2327.5 31 2674.0 32 2955.0 33 3236.0 34 3885.5 35 4535.0 36 4997.5 37 5460.0 38 5913.0 39 6366.0 40 7153.0 41 7940.0 42 9082.5 43 10225.0 44 12746.0 45 15267.0 46 50600.0 47 85933.0 48 59541.0 49 33149.0 50 30559.5 51 27970.0 52 23081.5 53 18193.0 54 16529.5 55 14866.0 56 13693.0 57 12520.0 58 11809.5 59 11099.0 60 10456.5 61 9814.0 62 9315.5 63 8817.0 64 8077.0 65 7337.0 66 6515.5 67 5694.0 68 4875.0 69 4056.0 70 3373.5 71 2691.0 72 2302.5 73 1914.0 74 1471.0 75 803.0 76 578.0 77 435.0 78 292.0 79 225.5 80 159.0 81 118.5 82 78.0 83 55.0 84 32.0 85 22.0 86 12.0 87 6.5 88 1.0 89 2.0 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 350543.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.42472286561319 #Duplication Level Percentage of deduplicated Percentage of total 1 76.6598578729355 31.75613367303649 2 8.94798156326306 7.41335312929577 3 4.357525690269315 5.415278822975887 4 2.8981496256713077 4.802201802660582 5 2.095011174560304 4.339262865326169 6 1.4015448963642314 3.4835165349361707 7 0.9717619397440351 2.8178478331673156 8 0.7147570345797232 2.368688965897003 9 0.4729045326968305 1.7630945287972666 >10 1.4066906058218844 8.393110335456228 >50 0.03760390057606068 1.097335061620701 >100 0.022980161463148192 1.8992781403024956 >500 0.0062673167626767804 1.936490606903198 >1k 0.004178211175117854 5.802548571109463 >5k 6.96368529186309E-4 2.086494348239361 >10k+ 0.002089105587558927 14.625364780275902 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCG 19346 5.5188664443449165 No Hit GAATCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTC 16503 4.707838981237679 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGC 14851 4.236570121211948 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7233 2.0633702570012806 No Hit GCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC 4331 1.2355117631788397 TruSeq Adapter, Index 16 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCT 3826 1.0914495511249689 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTCACTGTCGTA 3340 0.9528075015048083 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTCACTGT 3224 0.9197159834884736 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCT 3051 0.870363978171009 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTC 2343 0.6683916095885526 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATG 939 0.2678701329080883 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGTCACTGTCGT 935 0.26672904607993886 No Hit GAATGCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTT 931 0.26558795925178935 No Hit CTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGCT 788 0.22479410514544576 TruSeq Adapter, Index 13 (95% over 23bp) GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTAT 775 0.22108557295396 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCC 647 0.18457079445317692 No Hit GAATCTTTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTC 606 0.17287465446464487 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTGTCACTG 574 0.1637459598394491 No Hit CCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC 518 0.1477707442453565 TruSeq Adapter, Index 16 (95% over 21bp) GAACTGTCCCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCT 372 0.1061210750179008 No Hit TAATGATACGGCGACCACCGACTGTCTCTTATACACATCTGACGCTGTCAC 355 0.10127145599826556 Illumina DpnII expression PCR Primer 2 (95% over 23bp) GAATGCTGCCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTT 354 0.10098618429122817 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.23677551684101522 0.0 2 0.0 0.0 0.0 1.852554465500666 0.0 3 0.0 0.0 0.0 2.186322362734386 0.0 4 0.0 0.0 0.0 3.75303457778361 0.0 5 0.0 0.0 0.0 9.578568107193696 0.0 6 0.0 0.0 0.0 10.498284090682171 0.0 7 0.0 0.0 0.0 11.98740240141723 0.0 8 0.0 0.0 0.0 13.473953266788953 0.0 9 0.0 0.0 0.0 13.910704250263164 0.0 10 0.0 0.0 0.0 20.446564330196296 0.0 11 0.0 0.0 0.0 21.59364186419355 0.0 12 0.0 0.0 0.0 27.072570269553236 0.0 13 0.0 0.0 0.0 27.746382041575497 0.0 14 0.0 0.0 0.0 28.12008797779445 0.0 15 0.0 0.0 0.0 29.378706749243317 0.0 16 0.0 0.0 0.0 30.107290689016754 0.0 17 0.0 0.0 0.0 30.75999235471825 0.0 18 0.0 0.0 0.0 31.450635157455718 0.0 19 0.0 0.0 0.0 32.83933782731363 0.0 20 0.0 0.0 0.0 33.38848586336056 0.0 21 0.0 0.0 0.0 33.84549113803442 0.0 22 0.0 0.0 0.0 34.443420635984744 0.0 23 0.0 0.0 0.0 34.84622428632151 0.0 24 2.8527170703736775E-4 0.0 0.0 35.13691615579258 0.0 25 2.8527170703736775E-4 0.0 0.0 35.40906536430624 0.0 26 2.8527170703736775E-4 0.0 0.0 35.71715880790659 0.0 27 2.8527170703736775E-4 0.0 0.0 36.07916860413701 0.0 28 2.8527170703736775E-4 0.0 0.0 36.32678444584545 0.0 29 2.8527170703736775E-4 0.0 0.0 36.57582664608907 0.0 30 2.8527170703736775E-4 0.0 0.0 36.89304878431462 0.0 31 2.8527170703736775E-4 0.0 0.0 37.16890652501976 0.0 32 2.8527170703736775E-4 0.0 0.0 37.431927038908206 0.0 33 2.8527170703736775E-4 0.0 0.0 37.71577238741039 0.0 34 2.8527170703736775E-4 0.0 0.0 37.97479909740032 0.0 35 2.8527170703736775E-4 0.0 0.0 38.25322428346879 0.0 36 2.8527170703736775E-4 0.0 0.0 38.51168045004464 0.0 37 2.8527170703736775E-4 0.0 0.0 38.768710258085314 0.0 38 2.8527170703736775E-4 0.0 0.0 39.0342982173371 0.0 39 2.8527170703736775E-4 0.0 0.0 39.299315633174814 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTTA 30 2.1611686E-6 45.000004 6 GATCCGT 35 1.2087003E-7 45.000004 5 TTGAGCG 25 3.8852384E-5 45.000004 1 CACAACG 35 1.2087003E-7 45.000004 12 ACCGGTC 20 7.02657E-4 45.0 17 TCCGCTA 20 7.02657E-4 45.0 1 CACGGGC 55 1.8189894E-12 45.0 4 CTAACGG 40 6.7921064E-9 45.0 2 AATTGAG 20 7.02657E-4 45.0 1 CGCTACG 20 7.02657E-4 45.0 3 GAGTTAG 20 7.02657E-4 45.0 1 GCTACGA 20 7.02657E-4 45.0 4 GCTAACG 20 7.02657E-4 45.0 1 CAATAGG 20 7.02657E-4 45.0 2 GTTATAG 20 7.02657E-4 45.0 1 GGCTAAT 20 7.02657E-4 45.0 8 GTAGGGT 65 0.0 44.999996 4 CGTTTTT 4380 0.0 44.17808 1 TGATCCG 85 0.0 42.35294 4 ACGGCTG 1755 0.0 41.666668 8 >>END_MODULE