##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552084_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 581268 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.38160022571344 28.0 25.0 31.0 16.0 33.0 2 27.206613816690407 30.0 25.0 31.0 16.0 33.0 3 27.48297515087705 30.0 25.0 31.0 16.0 33.0 4 31.06623106725297 33.0 28.0 35.0 19.0 37.0 5 31.619046635975145 33.0 30.0 35.0 26.0 35.0 6 31.98650364375813 35.0 32.0 35.0 25.0 36.0 7 32.96480625116126 35.0 32.0 35.0 28.0 36.0 8 33.273042727278984 35.0 33.0 35.0 28.0 37.0 9 34.4306877378421 35.0 33.0 39.0 28.0 39.0 10 34.9250999538939 37.0 34.0 39.0 30.0 39.0 11 35.45729164516196 37.0 34.0 39.0 30.0 39.0 12 34.462941362676084 35.0 32.0 38.0 28.0 39.0 13 34.88980642319894 37.0 33.0 39.0 30.0 39.0 14 36.4144835084677 38.0 35.0 39.0 32.0 41.0 15 35.893744365765876 38.0 34.0 40.0 29.0 41.0 16 36.352169739259686 38.0 34.0 40.0 31.0 41.0 17 34.91073136659854 37.0 32.0 39.0 27.0 41.0 18 34.57397964450133 37.0 32.0 39.0 27.0 40.0 19 34.33774609990572 37.0 32.0 39.0 27.0 40.0 20 34.54117721945815 36.0 33.0 39.0 27.0 40.0 21 35.70722627084236 37.0 34.0 39.0 30.0 40.0 22 36.3631268192985 38.0 35.0 39.0 31.0 40.0 23 36.40130542193962 38.0 35.0 40.0 31.0 41.0 24 36.544146589869044 38.0 35.0 40.0 31.0 41.0 25 35.972437842785084 38.0 35.0 40.0 30.0 41.0 26 35.93364850636883 38.0 35.0 40.0 30.0 41.0 27 36.47501496727843 38.0 35.0 40.0 31.0 41.0 28 36.39656406339245 38.0 35.0 40.0 31.0 41.0 29 36.351665668848106 38.0 35.0 40.0 31.0 41.0 30 35.89927709765547 38.0 35.0 40.0 30.0 41.0 31 35.88724822285074 38.0 35.0 40.0 30.0 41.0 32 35.56955483529112 38.0 35.0 40.0 29.0 41.0 33 35.253266995602715 38.0 35.0 40.0 25.0 41.0 34 35.086168514351385 38.0 35.0 40.0 25.0 41.0 35 34.51074719406539 38.0 34.0 40.0 21.0 41.0 36 34.51892930627525 38.0 34.0 40.0 21.0 41.0 37 34.25208681709642 38.0 34.0 40.0 18.0 41.0 38 34.29667554381112 38.0 34.0 40.0 18.0 41.0 39 33.97245676693023 38.0 34.0 40.0 18.0 40.0 40 33.474233916197 37.0 33.0 40.0 15.0 41.0 41 33.27048280655395 37.0 33.0 40.0 15.0 41.0 42 33.44817536833268 37.0 33.0 40.0 15.0 41.0 43 33.53412883558015 37.0 33.0 40.0 15.0 41.0 44 33.523710233489545 37.0 33.0 40.0 15.0 41.0 45 33.582770770109484 37.0 33.0 40.0 17.0 40.0 46 33.086502267456666 37.0 33.0 40.0 15.0 40.0 47 32.9277734194898 37.0 32.0 39.0 15.0 40.0 48 33.105237171149966 37.0 32.0 40.0 15.0 40.0 49 33.00233111060647 37.0 32.0 40.0 15.0 40.0 50 33.0221051219059 36.0 32.0 40.0 15.0 40.0 51 29.59052622886517 33.0 26.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 4.0 10 5.0 11 5.0 12 10.0 13 12.0 14 46.0 15 70.0 16 183.0 17 448.0 18 745.0 19 1057.0 20 1578.0 21 2357.0 22 3540.0 23 5168.0 24 7445.0 25 11290.0 26 14803.0 27 16314.0 28 16140.0 29 15971.0 30 18370.0 31 22996.0 32 30829.0 33 40838.0 34 54422.0 35 79774.0 36 99822.0 37 90966.0 38 42371.0 39 3686.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 50.07019137471872 11.552846535505138 15.974042954368725 22.40291913540742 2 28.712573202034175 41.44060915102844 17.670850623120486 12.175967023816897 3 19.867427761376852 40.02250252895394 29.477452741248445 10.632616968420763 4 18.77670885030657 16.124920002477342 51.99684138813766 13.101529759078428 5 31.579237116097907 18.746602255758102 29.945223201690098 19.72893742645389 6 16.99388233998775 37.64167303206094 34.40925700365408 10.955187624297226 7 58.827253521611375 3.136591038901161 33.98380781326342 4.052347626224048 8 51.40658009730451 15.648891733245248 25.69812891815823 7.2463992512920035 9 47.72824239421403 3.9991879821356067 22.22399994494794 26.04856967870242 10 30.709070514805564 15.629967588100497 33.27139976740505 20.389562129688887 11 22.141765932409836 16.886874901078333 37.19489116896165 23.77646799755018 12 20.675660796740917 13.263245181224494 44.61298402802149 21.44810999401309 13 16.226938348575874 16.579959674367075 52.606887012531224 14.586214964525828 14 16.399836220125657 25.886510181190086 35.362517805900204 22.351135792784053 15 12.249427114515163 18.537060357700753 53.5331378985253 15.680374629258791 16 13.429261545448915 24.679837871687415 32.49292925122319 29.397971331640484 17 14.269149514509657 20.361519987338024 40.62601072138841 24.743319776763904 18 14.8588946922934 23.935430816766104 38.41136962640297 22.79430486453753 19 15.033857016040795 24.809210209404267 32.676493459127286 27.480439315427653 20 15.853960651541113 24.633387697241204 42.7334723397813 16.779179311436376 21 17.516016708299787 28.13229009682281 37.06379845441346 17.28789474046395 22 14.996696876483826 17.554553149321826 35.56483412126592 31.883915852928425 23 16.63879656199894 26.8442439631977 38.51080740725448 18.006152067548875 24 24.461522051790226 17.888650329968275 30.319233124823665 27.330594493417838 25 14.709221907966722 35.24019901319185 28.97389844271489 21.07668063612654 26 18.2533702182126 17.50276980669846 35.094311057894124 29.149548917194824 27 24.105576085385742 21.08906734931219 29.617663453002745 25.18769311229932 28 17.72022543817998 18.04141979259137 38.65101811900879 25.587336650219868 29 30.748639181926407 17.129964147346836 29.714520668607253 22.406876002119507 30 19.06951698700083 22.53470000068815 40.16082082619377 18.234962186117247 31 29.670306984041783 18.403387077905546 27.44534362806829 24.480962309984378 32 23.8759057784017 29.90754694908373 28.758851338797246 17.45769593371732 33 16.799135682679932 19.138332060254477 27.235973767694077 36.826558489371514 34 28.168073934914705 18.096987964243688 27.94838181355244 25.78655628728917 35 16.57823929753573 20.466807049416104 39.398177776860244 23.55677587618792 36 28.23379232987194 26.560209748343276 26.20615619645327 18.999841725331517 37 16.833887294673026 25.62862569417205 38.866753373658966 18.670733637495957 38 21.737821452410934 21.661264683416256 25.4417927702884 31.159121093884405 39 25.146404068347135 23.405554752713034 27.097655470454246 24.350385708485586 40 18.659035075042837 18.973003846762595 39.82035825127136 22.54760282692321 41 17.281013233138587 32.436672928838334 26.40434360742377 23.87797023059931 42 18.975068298960203 19.4223662751089 43.37809753848483 18.224467887446067 43 26.29097077423839 22.772628116462627 26.03876353076378 24.897637578535203 44 22.977352959392224 18.617229918041247 30.43931542765127 27.966101694915253 45 18.87442625432675 16.801200134877543 31.5186798516347 32.80569375916101 46 29.33311312509892 23.97964450133157 27.34435750806857 19.342884865500938 47 16.229862989189154 17.0783528424066 45.690111962124185 21.001672206280062 48 22.59112836075614 20.860085193060687 27.996208289463727 28.55257815671945 49 16.722578913685254 16.82356503368498 42.288582891196484 24.16527316143328 50 20.260705905021435 16.492220455968678 36.20343800105975 27.043635637950135 51 20.720562632038924 16.14246784615702 29.056132455252996 34.080837066551055 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 123.0 1 338.0 2 553.0 3 10608.5 4 20664.0 5 14085.0 6 7506.0 7 6980.5 8 6455.0 9 6269.0 10 6083.0 11 5862.5 12 5642.0 13 5283.0 14 4924.0 15 4582.0 16 4240.0 17 3919.5 18 3599.0 19 3488.5 20 3378.0 21 3148.5 22 2919.0 23 2909.5 24 2900.0 25 2886.0 26 3100.0 27 3328.0 28 3714.0 29 4100.0 30 4651.0 31 5202.0 32 5878.0 33 6554.0 34 7278.5 35 8003.0 36 8804.0 37 9605.0 38 10312.5 39 11020.0 40 12281.0 41 13542.0 42 15403.0 43 17264.0 44 21595.0 45 25926.0 46 91925.0 47 157924.0 48 102821.5 49 47719.0 50 45858.0 51 43997.0 52 36099.5 53 28202.0 54 25719.0 55 23236.0 56 21709.0 57 20182.0 58 18942.5 59 17703.0 60 16716.5 61 15730.0 62 14761.0 63 13792.0 64 12535.5 65 11279.0 66 9793.5 67 8308.0 68 7271.0 69 6234.0 70 5142.5 71 4051.0 72 3360.5 73 2670.0 74 2232.5 75 1334.0 76 873.0 77 723.0 78 573.0 79 417.0 80 261.0 81 204.0 82 147.0 83 126.0 84 105.0 85 74.0 86 43.0 87 30.5 88 18.0 89 14.0 90 10.0 91 9.0 92 8.0 93 6.0 94 4.0 95 3.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 581268.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.68230509557882 #Duplication Level Percentage of deduplicated Percentage of total 1 75.4231573803579 29.175415850588614 2 8.94413815790449 6.919597620821396 3 4.588471944224651 5.324780150070049 4 3.1394038545399177 4.857575108781969 5 2.2511944073495416 4.354069444727786 6 1.5982269991130913 3.709386263501039 7 1.1060493488825918 2.99491768549699 8 0.8213665811467935 2.541788214978621 9 0.5320255351773033 1.8521976663330342 >10 1.5171863277865174 8.505861491902628 >50 0.03893697622156719 1.0667550713470764 >100 0.03078737654659555 2.2361400017622723 >500 0.0045275553744993455 1.2867262369163075 >1k 9.055110748998692E-4 1.170786020659523 >5k 0.0018110221497997384 4.998039111081746 >10k+ 0.0018110221497997384 19.00596406103098 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTC 43010 7.3993407515982295 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCG 31783 5.467873683051535 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGC 20806 3.5794160352883693 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12922 2.2230709414590173 No Hit GAACTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTCT 9520 1.6377987434367625 No Hit GCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTCTGC 7962 1.3697640331138132 TruSeq Adapter, Index 16 (95% over 22bp) GAATGACTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCT 5867 1.009345086947845 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTC 5189 0.892703537782916 No Hit GAATGCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTT 3729 0.64152852040711 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGACCTATCGTA 2956 0.5085433913444402 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGACCTAT 963 0.16567228885815147 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTGACCTATCGT 850 0.14623203066399665 No Hit CTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTCTGCT 833 0.14330739005071672 TruSeq Adapter, Index 13 (95% over 22bp) GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGTGACCTATCGTAT 816 0.14038274943743678 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCC 769 0.13229697833013343 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATG 724 0.12455528258909833 No Hit GAATCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTT 648 0.11148041867090566 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCC 595 0.10236242146479765 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.440753662682274E-4 0.0 0.0 0.17926326582574648 0.0 2 3.440753662682274E-4 0.0 0.0 1.9226931467068546 0.0 3 3.440753662682274E-4 0.0 0.0 2.2523173475918163 0.0 4 3.440753662682274E-4 0.0 0.0 4.368552887824549 0.0 5 3.440753662682274E-4 0.0 0.0 13.622115788242256 0.0 6 3.440753662682274E-4 0.0 0.0 15.018545662241857 0.0 7 3.440753662682274E-4 0.0 0.0 16.742363247245677 0.0 8 3.440753662682274E-4 0.0 0.0 18.489577957155735 0.0 9 3.440753662682274E-4 0.0 0.0 18.91089824315118 0.0 10 3.440753662682274E-4 0.0 0.0 25.862941018600715 0.0 11 3.440753662682274E-4 0.0 0.0 26.752031765037813 0.0 12 3.440753662682274E-4 0.0 0.0 31.612784464309062 0.0 13 3.440753662682274E-4 0.0 0.0 32.121843968702905 0.0 14 3.440753662682274E-4 0.0 0.0 32.42067342430686 0.0 15 3.440753662682274E-4 0.0 0.0 33.19260650852963 0.0 16 3.440753662682274E-4 0.0 0.0 33.74381524529133 0.0 17 3.440753662682274E-4 0.0 0.0 34.28418560801558 0.0 18 3.440753662682274E-4 0.0 0.0 34.88304878300543 0.0 19 3.440753662682274E-4 0.0 0.0 35.419978392067 0.0 20 3.440753662682274E-4 0.0 0.0 35.78452624262818 0.0 21 3.440753662682274E-4 0.0 0.0 36.15819209039548 0.0 22 3.440753662682274E-4 0.0 0.0 36.63422035962757 0.0 23 3.440753662682274E-4 0.0 0.0 37.01304733788889 0.0 24 3.440753662682274E-4 0.0 0.0 37.30946826592897 0.0 25 3.440753662682274E-4 0.0 0.0 37.55204139914807 0.0 26 3.440753662682274E-4 0.0 0.0 37.822140561668625 0.0 27 3.440753662682274E-4 0.0 0.0 38.11322832153155 0.0 28 3.440753662682274E-4 0.0 0.0 38.34960809815782 0.0 29 3.440753662682274E-4 0.0 0.0 38.612309640303614 0.0 30 3.440753662682274E-4 0.0 0.0 38.94984757461274 0.0 31 3.440753662682274E-4 0.0 0.0 39.228376583606874 0.0 32 3.440753662682274E-4 0.0 0.0 39.50466910272026 0.0 33 3.440753662682274E-4 0.0 0.0 39.786466827693935 0.0 34 3.440753662682274E-4 0.0 0.0 40.06172712070852 0.0 35 3.440753662682274E-4 0.0 0.0 40.33887982823758 0.0 36 3.440753662682274E-4 0.0 0.0 40.615688460400364 0.0 37 3.440753662682274E-4 0.0 0.0 40.89215301719689 0.0 38 3.440753662682274E-4 0.0 0.0 41.16087587825237 0.0 39 3.440753662682274E-4 0.0 0.0 41.44095322639471 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGCTAG 20 7.0304045E-4 45.000004 1 ACGGGAC 25 3.8884187E-5 45.0 5 TATCGAG 25 3.8884187E-5 45.0 1 CGTTTTT 6795 0.0 43.84106 1 TACGGCT 2590 0.0 43.088802 7 ACGGCTG 2615 0.0 42.93499 8 GAATCTG 5120 0.0 42.49512 1 GATACCT 4075 0.0 41.742332 5 AATCTGT 5220 0.0 41.681034 2 TGATACC 4065 0.0 41.67897 4 CGGCTGT 2715 0.0 41.602207 9 TGATCCG 65 0.0 41.538464 4 GAATGAT 8820 0.0 40.688778 1 ATACCTG 4205 0.0 40.665874 6 GAATGAC 780 0.0 40.384617 1 AATGATA 8455 0.0 40.15671 2 ATGATAC 8500 0.0 40.07647 3 AATGACT 765 0.0 40.0 2 TACCTGT 4280 0.0 39.95327 7 TACGGGA 85 0.0 39.705883 4 >>END_MODULE