##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552083_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 460078 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.138650402757794 28.0 16.0 31.0 16.0 33.0 2 25.8515534322441 28.0 19.0 31.0 16.0 33.0 3 26.288592369120018 30.0 23.0 33.0 16.0 33.0 4 29.213689852590214 32.0 19.0 35.0 19.0 37.0 5 31.259288642360644 33.0 28.0 35.0 19.0 37.0 6 29.997243945591833 33.0 28.0 35.0 17.0 37.0 7 31.949910667321628 33.0 31.0 35.0 28.0 36.0 8 32.72202322214929 35.0 32.0 35.0 28.0 37.0 9 34.106021152934936 35.0 32.0 37.0 28.0 39.0 10 33.662444194245325 35.0 32.0 39.0 27.0 39.0 11 34.19288903185981 35.0 32.0 39.0 27.0 39.0 12 34.396484943857345 37.0 32.0 39.0 27.0 39.0 13 34.62637639704572 37.0 33.0 39.0 27.0 39.0 14 35.08786118875495 37.0 33.0 39.0 27.0 41.0 15 35.446393872343386 37.0 33.0 40.0 27.0 41.0 16 35.255524063311 37.0 33.0 40.0 27.0 41.0 17 34.2331626376397 36.0 32.0 39.0 25.0 41.0 18 34.338166571755224 36.0 32.0 39.0 27.0 40.0 19 33.85537452345037 37.0 32.0 39.0 25.0 40.0 20 33.793421984967765 35.0 32.0 38.0 25.0 40.0 21 34.752731058646575 36.0 33.0 39.0 27.0 40.0 22 35.521009481001045 37.0 34.0 39.0 30.0 40.0 23 36.00091506222858 37.0 34.0 40.0 30.0 40.0 24 35.293995800712054 36.0 34.0 39.0 30.0 40.0 25 34.19806641482531 36.0 33.0 39.0 25.0 40.0 26 34.639263342302826 36.0 33.0 39.0 27.0 40.0 27 35.19239129017254 37.0 34.0 39.0 30.0 40.0 28 35.18536856793848 37.0 34.0 39.0 28.0 40.0 29 35.2962910636892 37.0 34.0 40.0 27.0 40.0 30 34.25722594864349 36.0 33.0 39.0 24.0 40.0 31 34.40758306200253 36.0 33.0 39.0 25.0 40.0 32 34.10947926221206 36.0 33.0 39.0 24.0 40.0 33 33.81615943383513 37.0 33.0 39.0 21.0 40.0 34 34.023059133451284 37.0 33.0 40.0 21.0 40.0 35 33.820862984102696 37.0 33.0 40.0 18.0 41.0 36 33.746614704463155 37.0 33.0 40.0 18.0 41.0 37 33.74638865583662 37.0 33.0 40.0 16.0 40.0 38 33.39309856154826 37.0 33.0 40.0 16.0 41.0 39 33.35088180699795 37.0 33.0 40.0 15.0 40.0 40 32.77795286886137 36.0 31.0 39.0 15.0 40.0 41 32.54532057607623 36.0 31.0 39.0 15.0 40.0 42 33.04605523411248 37.0 33.0 40.0 15.0 40.0 43 33.13652032916158 37.0 33.0 40.0 15.0 40.0 44 33.449873717065365 37.0 33.0 40.0 15.0 40.0 45 33.42502575650216 37.0 33.0 40.0 17.0 40.0 46 33.17700042166763 36.0 33.0 40.0 17.0 40.0 47 33.015958163615736 36.0 32.0 40.0 17.0 40.0 48 32.97679741261264 36.0 32.0 39.0 15.0 40.0 49 33.095244719373675 36.0 33.0 40.0 15.0 40.0 50 33.087798155964855 36.0 33.0 40.0 15.0 40.0 51 31.842313694634388 35.0 30.0 39.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 7.0 10 11.0 11 11.0 12 17.0 13 27.0 14 39.0 15 63.0 16 128.0 17 279.0 18 525.0 19 959.0 20 1604.0 21 2397.0 22 3543.0 23 5078.0 24 7567.0 25 11086.0 26 13369.0 27 14159.0 28 14019.0 29 15373.0 30 19039.0 31 24267.0 32 31614.0 33 39969.0 34 53032.0 35 70625.0 36 70136.0 37 46695.0 38 13741.0 39 694.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.098174657340714 13.357300283864909 16.57588495863745 25.968640100156932 2 34.33874256104399 32.521007307456564 18.89157925395259 14.248670877546852 3 22.4990110372589 30.994527014984413 32.99853503101648 13.507926916740203 4 20.381761353509624 17.873273662292046 47.42587126530719 14.319093718891143 5 29.08115580401584 20.683666682605992 32.57360708401619 17.661570429361976 6 18.990692882511226 33.29348501775786 34.45415777324715 13.261664326483771 7 60.69057855407126 3.2924851872943286 32.459278644056006 3.5576576145783974 8 57.769117410526036 12.27465777542069 23.80878894448333 6.147435869569942 9 53.285747199387934 3.8139185094701338 22.776355313664205 20.123978977477734 10 33.33282617295328 16.905394302705194 31.525523932898338 18.23625559144319 11 25.272671155760545 17.958911315037884 36.51359117367055 20.25482635553102 12 20.73257143353953 14.951377809849633 42.01265872308609 22.303392033524748 13 19.651450406235465 17.15296101965319 47.84210503436374 15.353483539747609 14 17.050152365468463 24.079612587430827 38.509774429553254 20.36046061754746 15 14.395602484796054 19.221740661366116 47.990775477201694 18.391881376636135 16 16.849968918313852 21.340294471806953 35.805885089050115 26.003851520829073 17 17.292937284547403 21.546346489073592 39.2737753163594 21.886940910019607 18 17.6441820734745 21.26617660483657 38.107451345206684 22.982189976482246 19 17.31271653936941 23.761623029138537 34.32939631975447 24.596264111737575 20 19.659927229730613 22.649855024582788 40.85720247436304 16.83301527132356 21 19.660144584179204 25.950817035372264 36.83897078321502 17.55006759723351 22 17.71069253474411 17.91565777976778 38.42044175118132 25.953207934306793 23 19.231738966001416 24.484543925160516 37.96421476358356 18.319502345254502 24 22.385769369541684 19.91597077017375 33.98554158207956 23.712718278205 25 17.244467242511053 28.781424019405407 32.47231991097162 21.501788827111927 26 17.895661170497178 18.791378853150988 37.09001517134051 26.222944805011323 27 23.108690265563666 20.49348154008668 32.28300418624668 24.114824008102975 28 17.476384439160316 20.409148014032404 37.56276109703137 24.551706449775907 29 22.695716813236018 18.29168097583453 32.530788257643266 26.48181395328618 30 24.584092262616338 22.86047148526989 33.70841466012285 18.847021591990924 31 26.595055621003393 20.035950425797363 29.539773690548127 23.829220262651116 32 24.22219710570816 29.097240033211758 28.929877107794766 17.75068575328531 33 20.627371880420277 26.093618908098193 28.028725563926116 25.250283647555417 34 21.686322753967804 23.654032577084756 28.09654015188729 26.56310451706015 35 22.1445059316029 29.462830215746028 26.91760962271615 21.475054229934923 36 23.352996665782758 29.311334165076357 26.02210929451093 21.313559874629952 37 21.869335199683533 28.1530523085216 30.545907433087432 19.431705058707436 38 23.083911858424006 29.20722138420007 25.62761097031373 22.081255787062194 39 23.30539604154078 26.014936597707344 27.126921956711687 23.552745404040184 40 20.5363003664596 29.281773960067643 30.58655271497442 19.59537295849834 41 19.094370954490326 30.47309369280861 27.49468568373189 22.937849668969175 42 20.273084129212872 25.97059629019427 33.902946891614036 19.853372688978826 43 23.572307304413602 24.37543199196658 27.8287594712201 24.223501232399723 44 23.68120188315894 21.376810019170662 29.47804502714757 25.463943070522827 45 21.25117914788362 20.447185042536265 30.51526045583575 27.786375353744365 46 26.332926155999637 25.026843274401294 28.216085098613714 20.424145470985355 47 18.529032033698634 21.83999234912341 38.64431683323263 20.98665878394533 48 22.183629732349733 22.713757232469277 29.452179847764942 25.65043318741605 49 19.00264737718387 21.006872747664527 37.01807084885607 22.97240902629554 50 20.01899677880707 20.304383169810336 34.3152682805959 25.361351770786694 51 20.460443663900467 19.56711688018119 30.850203661118332 29.122235794800012 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 79.0 1 303.5 2 528.0 3 9775.5 4 19023.0 5 12861.0 6 6699.0 7 6445.5 8 6192.0 9 6023.5 10 5855.0 11 5598.0 12 5341.0 13 5033.5 14 4726.0 15 4398.0 16 4070.0 17 3805.5 18 3541.0 19 3328.0 20 3115.0 21 2894.0 22 2673.0 23 2570.5 24 2468.0 25 2530.5 26 2832.0 27 3071.0 28 3431.0 29 3791.0 30 4072.0 31 4353.0 32 4850.0 33 5347.0 34 5962.5 35 6578.0 36 7284.5 37 7991.0 38 8853.5 39 9716.0 40 10536.5 41 11357.0 42 12591.5 43 13826.0 44 16323.5 45 18821.0 46 52715.0 47 86609.0 48 62031.0 49 37453.0 50 35702.0 51 33951.0 52 29904.0 53 25857.0 54 24202.0 55 22547.0 56 20780.5 57 19014.0 58 18131.0 59 17248.0 60 16491.0 61 15734.0 62 14796.5 63 13859.0 64 12621.0 65 11383.0 66 9815.5 67 8248.0 68 7035.0 69 5822.0 70 4970.0 71 4118.0 72 3406.0 73 2694.0 74 2186.5 75 1335.5 76 992.0 77 778.0 78 564.0 79 435.5 80 307.0 81 236.0 82 165.0 83 103.5 84 42.0 85 33.5 86 25.0 87 16.5 88 8.0 89 4.5 90 1.0 91 0.5 92 0.0 93 1.0 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 460078.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.69829709140911 #Duplication Level Percentage of deduplicated Percentage of total 1 75.62216741925143 34.5580427342123 2 9.708104488437774 8.872876862141434 3 5.015350640668525 6.875789507845778 4 3.120857375839607 5.704714701641351 5 2.080021340771205 4.752671659351682 6 1.3791174630411867 3.7813991730003944 7 0.9342634166263406 2.988597302223781 8 0.6335458849311986 2.3161574456500484 9 0.42039225462313723 1.7290089132025888 >10 1.0229834800781155 6.930984393742021 >50 0.03257036764626486 0.9923476083155534 >100 0.021875620060897674 2.191739759040063 >500 0.003402874231695194 1.115863451212065 >1k 0.002916749341453023 3.3289296867236304 >5k 4.8612489024217056E-4 1.2169420636551251 >10k+ 0.0019444995609686822 12.643934738042187 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTC 19501 4.238629102021831 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCG 16073 3.4935380522433155 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGC 10952 2.3804659209960053 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10390 2.258312720886458 No Hit GAACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCT 5478 1.1906676693951896 No Hit GCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC 3601 0.7826933693851913 No Hit GAATGACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCT 2476 0.5381696147175044 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGGAACAAT 2446 0.5316489812596995 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTC 2223 0.4831789392233491 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGGAACAATCGTA 2142 0.46557322888727565 No Hit GAATGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTT 2097 0.45579227870056815 No Hit GAATGCTGCCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTT 919 0.19974873825742592 No Hit GAATCTTTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTC 839 0.18236038236994595 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCC 753 0.163667899790905 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCGGAACAATCGT 749 0.16279848199653102 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATG 642 0.1395415559970266 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTAT 604 0.1312820869504736 No Hit GAACTGTCCCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCT 517 0.11237224992283916 No Hit CTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGCT 467 0.10150452749316421 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10824251539956269 0.0 2 0.0 0.0 0.0 1.0904672685935863 0.0 3 0.0 0.0 0.0 1.36585535496155 0.0 4 0.0 0.0 0.0 2.9751476923478193 0.0 5 0.0 0.0 0.0 8.15405213898513 0.0 6 0.0 0.0 0.0 9.33667769378236 0.0 7 0.0 0.0 0.0 10.505392563869604 0.0 8 0.0 0.0 0.0 11.70084203113385 0.0 9 0.0 0.0 0.0 12.184238324805793 0.0 10 0.0 0.0 0.0 16.529588461087034 0.0 11 0.0 0.0 0.0 17.380096418433396 0.0 12 0.0 0.0 0.0 20.606288498906707 0.0 13 0.0 0.0 0.0 21.08838066588709 0.0 14 0.0 0.0 0.0 21.378983563656597 0.0 15 0.0 0.0 0.0 22.0543038354366 0.0 16 0.0 0.0 0.0 22.50596637961389 0.0 17 0.0 0.0 0.0 22.958933050482745 0.0 18 0.0 0.0 0.0 23.420593899295337 0.0 19 0.0 0.0 0.0 24.275666300062163 0.0 20 0.0 0.0 0.0 24.636257330278777 0.0 21 0.0 0.0 0.0 24.947291546216075 0.0 22 0.0 0.0 0.0 25.373958328805116 0.0 23 0.0 0.0 0.0 25.67499424010711 0.0 24 0.0 0.0 0.0 25.934080742830563 0.0 25 0.0 0.0 0.0 26.165780585031232 0.0 26 0.0 0.0 0.0 26.444646342576693 0.0 27 0.0 0.0 0.0 26.74263929159838 0.0 28 0.0 0.0 0.0 26.956950777911572 0.0 29 0.0 0.0 0.0 27.173870517607885 0.0 30 0.0 0.0 0.0 27.421437234555878 0.0 31 0.0 0.0 0.0 27.65313707675655 0.0 32 0.0 0.0 0.0 27.88657575454597 0.0 33 0.0 0.0 0.0 28.12327474906429 0.0 34 0.0 0.0 0.0 28.364538187003074 0.0 35 0.0 0.0 0.0 28.623842044175117 0.0 36 0.0 0.0 0.0 28.854889823030007 0.0 37 0.0 0.0 0.0 29.09658796986598 0.0 38 0.0 0.0 0.0 29.366976903916292 0.0 39 0.0 0.0 0.0 29.6375831924152 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTACGG 30 2.162653E-6 45.000004 2 CTATGCG 20 7.02887E-4 45.0 1 TCGCACG 25 3.887146E-5 45.0 35 CGAACAC 20 7.02887E-4 45.0 34 CGCTATC 20 7.02887E-4 45.0 26 TAACAGG 35 1.2098099E-7 45.0 2 CGCTACG 20 7.02887E-4 45.0 3 CGGTCTA 25 3.887146E-5 45.0 31 CTCTACG 25 3.887146E-5 45.0 1 CGTTTTT 6885 0.0 44.183006 1 TACGGCT 1215 0.0 42.03704 7 GAATCTG 2305 0.0 41.095444 1 ACGGCTG 1245 0.0 41.024097 8 AAGGGCG 145 0.0 40.344826 5 GATACCT 1970 0.0 40.317257 5 TGATACC 2005 0.0 40.062344 4 TTAACGG 45 1.9239451E-8 40.000004 2 AATCTGT 2380 0.0 39.80042 2 CGTTAGG 40 3.4521872E-7 39.375 2 CGACCAC 1030 0.0 39.10194 12 >>END_MODULE