SRR3552075_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552075_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	200777
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6486	3.230449702904217	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1303	0.6489787176818063	No Hit
GCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGC	725	0.36109713762034495	No Hit
CCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGC	496	0.24704024863405669	No Hit
CTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGCT	374	0.18627631651035725	Illumina Single End Adapter 2 (95% over 21bp)
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	359	0.17880534124924669	No Hit
TCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGC	242	0.12053173421258412	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGGA	20	7.0193666E-4	45.0	4
AGGACCG	25	3.8792725E-5	45.0	7
AGTGCGC	20	7.0193666E-4	45.0	11
CTTGCGG	20	7.0193666E-4	45.0	2
GGTATGC	20	7.0193666E-4	45.0	8
AGCGACT	25	3.8792725E-5	45.0	19
GGCGAGG	35	1.2052442E-7	45.0	2
GTGCGCA	25	3.8792725E-5	45.0	12
AGTGTTG	25	3.8792725E-5	45.0	1
AGGGTAC	30	2.1565265E-6	44.999996	6
TACCGGG	30	2.1565265E-6	44.999996	3
CGTTTTA	610	0.0	44.63115	1
CGTTTTT	3435	0.0	44.213974	1
GTTTTAT	660	0.0	41.931816	2
AGGCGAT	60	3.6379788E-12	41.249996	7
GGCGATA	50	1.0713848E-9	40.5	8
GGGCACC	45	1.9146682E-8	40.0	7
GTGATAG	40	3.439236E-7	39.375	1
AACGGGC	40	3.439236E-7	39.375	4
TTGGCGG	35	6.2225627E-6	38.571426	2