##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552075_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 200777 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.77184637682603 31.0 31.0 34.0 30.0 34.0 2 31.881022228641726 33.0 31.0 34.0 30.0 34.0 3 31.162518615180026 31.0 31.0 34.0 28.0 34.0 4 35.30873556234031 37.0 35.0 37.0 33.0 37.0 5 35.52738610498214 37.0 35.0 37.0 33.0 37.0 6 35.55704089611858 37.0 35.0 37.0 33.0 37.0 7 30.128261703282746 37.0 35.0 37.0 0.0 37.0 8 31.997051455096948 37.0 33.0 37.0 17.0 37.0 9 36.020689620823106 39.0 34.0 39.0 32.0 39.0 10 36.56877032727852 38.0 35.0 39.0 32.0 39.0 11 36.93313477141306 39.0 37.0 39.0 33.0 39.0 12 37.12309178840206 39.0 37.0 39.0 34.0 39.0 13 37.09521508937777 39.0 37.0 39.0 33.0 39.0 14 38.132046997415046 40.0 37.0 41.0 33.0 41.0 15 38.33821105007048 40.0 38.0 41.0 33.0 41.0 16 38.22717243508968 40.0 37.0 41.0 33.0 41.0 17 38.07805674952808 40.0 37.0 41.0 33.0 41.0 18 37.78971694965061 39.0 37.0 40.0 33.0 41.0 19 37.379301414006584 38.0 37.0 40.0 33.0 41.0 20 37.16297185434587 39.0 35.0 40.0 33.0 41.0 21 37.06283090194594 38.0 35.0 40.0 33.0 41.0 22 37.12160755465018 38.0 35.0 40.0 33.0 41.0 23 37.07041145151088 38.0 35.0 40.0 33.0 41.0 24 36.935062283030426 38.0 35.0 40.0 33.0 41.0 25 36.588782579677954 38.0 35.0 40.0 33.0 41.0 26 36.61443292807443 38.0 35.0 40.0 33.0 41.0 27 36.63146675166976 38.0 35.0 40.0 33.0 41.0 28 36.55609457258551 38.0 35.0 40.0 33.0 41.0 29 36.47205606219836 38.0 35.0 40.0 33.0 41.0 30 36.16607978005449 38.0 35.0 40.0 31.0 41.0 31 35.88445389661166 38.0 35.0 40.0 31.0 41.0 32 35.4141460426244 38.0 35.0 40.0 28.0 41.0 33 34.750414639126994 38.0 34.0 40.0 22.0 41.0 34 34.03054134686742 38.0 34.0 40.0 18.0 41.0 35 33.552533407711046 38.0 33.0 40.0 15.0 41.0 36 33.250138213042334 38.0 33.0 40.0 10.0 41.0 37 33.035392500136965 38.0 33.0 40.0 10.0 41.0 38 32.9334734556249 37.0 33.0 40.0 10.0 41.0 39 32.83295397381174 37.0 32.0 40.0 10.0 41.0 40 32.71000164361456 37.0 32.0 40.0 10.0 41.0 41 32.544091205665985 37.0 31.0 40.0 10.0 41.0 42 32.41071935530464 37.0 31.0 40.0 10.0 41.0 43 32.325580121229024 37.0 31.0 40.0 10.0 41.0 44 32.202363816572614 37.0 31.0 40.0 10.0 41.0 45 32.14120143243499 36.0 31.0 40.0 9.0 41.0 46 32.03150759300119 36.0 31.0 40.0 9.0 41.0 47 31.95202637752332 36.0 31.0 40.0 8.0 41.0 48 31.91621550277173 36.0 30.0 40.0 8.0 41.0 49 31.858524631805437 36.0 30.0 40.0 8.0 41.0 50 31.63809101640128 35.0 29.0 40.0 8.0 41.0 51 30.18465262455361 35.0 26.0 39.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 6.0 10 7.0 11 7.0 12 5.0 13 7.0 14 9.0 15 9.0 16 21.0 17 59.0 18 111.0 19 189.0 20 336.0 21 588.0 22 902.0 23 1533.0 24 2567.0 25 4724.0 26 6926.0 27 7686.0 28 7111.0 29 6021.0 30 5478.0 31 5663.0 32 6421.0 33 8674.0 34 13792.0 35 17845.0 36 18257.0 37 26105.0 38 33393.0 39 26323.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.763942084999776 16.66724774252031 17.750041090363936 30.81876908211598 2 46.70256055225449 18.032443955233916 20.733450544634096 14.531544947877496 3 26.179293444966305 19.456411840001593 41.05948390502896 13.304810810003136 4 23.717856128939072 20.682647912858545 40.20231401007087 15.397181948131507 5 20.441584444433374 22.89355852512987 40.054886764918294 16.609970265518463 6 20.249829412731536 26.91792386578144 40.06534613028385 12.766900591203175 7 51.99699168729486 20.765824770765576 23.397102257728726 3.840081284210841 8 60.61003003332055 6.159072005259566 27.80896218192323 5.421935779496655 9 56.88251144304377 6.305005055359926 30.867081388804497 5.945402112791804 10 31.923477290725533 18.64805231674943 36.4210043979141 13.007465994610937 11 25.54924119794598 19.090334052207176 39.68582058701943 15.674604162827416 12 22.124048073235482 17.772454016147268 44.05185852961245 16.051639381004794 13 19.331397520632343 20.45802059000782 44.81788252638499 15.392699362974843 14 15.90122374574777 22.86915333927691 44.653521070640565 16.576101844334758 15 15.600392475233718 19.53709837282159 48.94484926062248 15.917659891322215 16 17.743068180120233 19.012635909491628 45.63421108991568 17.610084820472466 17 17.576216399288764 18.92398033639311 43.138407287687336 20.36139597663079 18 19.42254341881789 18.45779148009981 45.1695164286746 16.950148672407696 19 18.57384062915573 20.236879722278946 43.074156900441785 18.11512274812354 20 19.895705185354895 20.88037972476927 43.10752725660808 16.116387833267755 21 18.94738939221126 21.310209834791834 43.67233298634804 16.07006778664887 22 17.603111910228762 19.63173072612899 43.27537516747436 19.489782196167887 23 16.558171503708095 20.668702092371138 43.61057292418952 19.162553479731244 24 18.47173730058722 18.657515552080167 44.51157254067946 18.359174606653152 25 17.090104942299167 19.741803094976017 43.108523386642894 20.059568576081922 26 15.492810431473725 21.996045363761784 43.62352261464211 18.887621590122375 27 16.43216105430403 22.29488437420621 43.091091111033634 18.181863460456128 28 14.341782176245289 21.948729187108086 44.85224901258611 18.857239624060526 29 16.13830269403368 22.05033445065919 43.100554346364376 18.71080850894276 30 18.6191645457398 21.58563978941811 42.48644017990109 17.308755484941006 31 19.446948604670855 22.212703646333992 40.91853150510268 17.421816243892476 32 20.448059289659675 23.649621221554263 39.128485832540576 16.773833656245486 33 21.1592961345174 22.812373927292466 38.37242313611619 17.655906802073943 34 18.59077483974758 24.03861000014942 39.17630007421169 18.194315085891315 35 19.373733047111973 26.828770227665522 35.30135423878233 18.496142486440178 36 22.705289948549883 26.082668831589274 34.16178147895426 17.05025974090658 37 21.245461382528873 26.810341822021442 35.112587597184934 16.83160919826474 38 21.45166029973553 27.064354980899207 33.25878960239469 18.225195116970568 39 23.135618123589854 24.05405001568905 33.43709687862654 19.373234982094562 40 23.61027408517908 23.40108677786798 34.26687319762722 18.721765939325717 41 21.620006275619218 24.12925783331756 32.19093820507329 22.059797685989928 42 21.421278333673676 24.611882835185305 33.446560113957275 20.52027871718374 43 21.880494279723276 23.74325744482685 34.06764719066427 20.308601084785607 44 20.146231889110805 24.9087295855601 34.03079037937612 20.914248145952975 45 20.85398227884668 24.094891347116455 33.5830299287269 21.46809644530997 46 22.37407671197398 24.16711077464052 34.25093511707018 19.207877396315315 47 20.29913784945487 24.109833297638676 35.80888249152044 19.782146361386015 48 20.531236147566702 23.076846451535786 35.5224951065112 20.869422294386307 49 21.896930425297718 21.194658750753323 36.87972227894629 20.028688545002666 50 19.736324379784538 21.556752018408485 36.4747954197941 22.232128182012882 51 19.32591880544086 21.93079884648142 34.59559610911608 24.147686238961636 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 85.0 1 224.5 2 364.0 3 7322.5 4 14281.0 5 9389.5 6 4498.0 7 4140.0 8 3782.0 9 3717.0 10 3652.0 11 3487.5 12 3323.0 13 3129.5 14 2936.0 15 2753.0 16 2570.0 17 2324.0 18 2078.0 19 1924.0 20 1770.0 21 1677.5 22 1585.0 23 1544.5 24 1504.0 25 1537.0 26 1568.0 27 1566.0 28 1840.0 29 2114.0 30 2263.5 31 2413.0 32 2723.0 33 3033.0 34 3437.0 35 3841.0 36 4084.5 37 4328.0 38 4807.0 39 5286.0 40 6014.5 41 6743.0 42 8306.0 43 9869.0 44 11157.5 45 12446.0 46 13948.5 47 15451.0 48 16763.0 49 18075.0 50 17987.0 51 17899.0 52 15406.5 53 12914.0 54 11318.5 55 9723.0 56 8571.0 57 7419.0 58 6933.5 59 6448.0 60 5788.5 61 5129.0 62 4644.0 63 4159.0 64 3502.0 65 2845.0 66 2283.0 67 1721.0 68 1452.0 69 1183.0 70 1014.5 71 846.0 72 717.0 73 588.0 74 445.0 75 237.0 76 172.0 77 143.5 78 115.0 79 84.0 80 53.0 81 44.5 82 36.0 83 33.0 84 30.0 85 21.0 86 12.0 87 10.5 88 9.0 89 7.5 90 6.0 91 3.5 92 1.0 93 0.5 94 0.0 95 1.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 200777.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.96219619895558 #Duplication Level Percentage of deduplicated Percentage of total 1 78.62536447394977 40.0692125053582 2 9.053820874108547 9.228051914730385 3 3.3086150772531573 5.058428721413939 4 1.9624076096269922 4.000344064965368 5 1.2366133586498307 3.1510266302881043 6 0.9297087322871135 2.8427999293618886 7 0.77575693540099 2.7673994001224034 8 0.6547948345478227 2.6695826262631037 9 0.6368004726037846 2.9207475561979535 >10 2.7711317269142706 20.55782406886598 >50 0.026991542794617216 0.9241646724058459 >100 0.01499530155256512 1.4728556052509925 >500 9.99686770171008E-4 0.3693601915624246 >1k 9.99686770171008E-4 0.6638294201459851 >5k 9.99686770171008E-4 3.304372693067429 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6486 3.230449702904217 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1303 0.6489787176818063 No Hit GCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGC 725 0.36109713762034495 No Hit CCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGC 496 0.24704024863405669 No Hit CTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGCT 374 0.18627631651035725 Illumina Single End Adapter 2 (95% over 21bp) CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 359 0.17880534124924669 No Hit TCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGC 242 0.12053173421258412 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.22761571295516916 0.0 2 0.0 0.0 0.0 1.1684605308376956 0.0 3 0.0 0.0 0.0 1.5420092938932248 0.0 4 0.0 0.0 0.0 1.9494264781324555 0.0 5 0.0 0.0 0.0 3.0232546556627504 0.0 6 0.0 0.0 0.0 3.6513146426134466 0.0 7 0.0 0.0 0.0 4.376497307958581 0.0 8 0.0 0.0 0.0 5.796480672586999 0.0 9 0.0 0.0 0.0 6.370251572640292 0.0 10 0.0 0.0 0.0 7.476453976302066 0.0 11 0.0 0.0 0.0 9.058806536605289 0.0 12 0.0 0.0 0.0 10.249181928208909 0.0 13 0.0 0.0 0.0 10.776134716625908 0.0 14 0.0 0.0 0.0 10.987314284006635 0.0 15 0.0 0.0 0.0 11.406685028663642 0.0 16 0.0 0.0 0.0 12.266843313726174 0.0 17 0.0 0.0 0.0 13.235579772583513 0.0 18 0.0 0.0 0.0 14.337797656106028 0.0 19 0.0 0.0 0.0 14.943444717273392 0.0 20 0.0 0.0 0.0 15.504763991891501 0.0 21 0.0 0.0 0.0 16.172669180234788 0.0 22 0.0 0.0 0.0 16.832605328299557 0.0 23 0.0 0.0 0.0 17.489553086259882 0.0 24 0.0 0.0 0.0 18.020988459833546 0.0 25 0.0 0.0 0.0 18.522539932362772 0.0 26 0.0 0.0 0.0 18.974284903151258 0.0 27 0.0 0.0 0.0 19.451929254844927 0.0 28 0.0 0.0 0.0 19.89122260019823 0.0 29 0.0 0.0 0.0 20.32105271022079 0.0 30 0.0 0.0 0.0 20.83704806825483 0.0 31 0.0 0.0 0.0 21.32614791534887 0.0 32 0.0 0.0 0.0 21.774904496032914 0.0 33 0.0 0.0 0.0 22.249560457622138 0.0 34 0.0 0.0 0.0 22.697320908271365 0.0 35 0.0 0.0 0.0 23.143089098850965 0.0 36 0.0 0.0 0.0 23.570926948803898 0.0 37 0.0 0.0 0.0 24.035621610044974 0.0 38 0.0 0.0 0.0 24.47292269532865 0.0 39 0.0 0.0 0.0 25.009836784093796 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGGA 20 7.0193666E-4 45.0 4 AGGACCG 25 3.8792725E-5 45.0 7 AGTGCGC 20 7.0193666E-4 45.0 11 CTTGCGG 20 7.0193666E-4 45.0 2 GGTATGC 20 7.0193666E-4 45.0 8 AGCGACT 25 3.8792725E-5 45.0 19 GGCGAGG 35 1.2052442E-7 45.0 2 GTGCGCA 25 3.8792725E-5 45.0 12 AGTGTTG 25 3.8792725E-5 45.0 1 AGGGTAC 30 2.1565265E-6 44.999996 6 TACCGGG 30 2.1565265E-6 44.999996 3 CGTTTTA 610 0.0 44.63115 1 CGTTTTT 3435 0.0 44.213974 1 GTTTTAT 660 0.0 41.931816 2 AGGCGAT 60 3.6379788E-12 41.249996 7 GGCGATA 50 1.0713848E-9 40.5 8 GGGCACC 45 1.9146682E-8 40.0 7 GTGATAG 40 3.439236E-7 39.375 1 AACGGGC 40 3.439236E-7 39.375 4 TTGGCGG 35 6.2225627E-6 38.571426 2 >>END_MODULE