SRR3552069_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552069_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	194512
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTC	1249	0.6421197663897343	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCG	1218	0.6261824463272189	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1200	0.6169285185489841	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGC	1161	0.5968783416961421	No Hit
GCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC	746	0.3835238956979518	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGACAGAGT	457	0.23494694414740477	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCT	280	0.14394998766142963	No Hit
CTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGCT	272	0.13983713087110308	No Hit
CCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC	250	0.12852677469770502	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTA	243	0.12492802500616929	No Hit
GAACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCT	204	0.1048778481533273	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTC	199	0.1023073126593732	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACGT	25	3.8788225E-5	45.000004	45
CGACGGT	25	3.8788225E-5	45.000004	28
ATAGCGG	30	2.1561773E-6	45.000004	2
CACGACG	25	3.8788225E-5	45.000004	26
CGCGAGG	25	3.8788225E-5	45.000004	2
CGACAAA	30	2.1561773E-6	45.000004	12
ACGGGCT	25	3.8788225E-5	45.000004	5
ATCCGGC	50	2.1827873E-11	45.000004	6
TACGAAT	25	3.8788225E-5	45.000004	12
AGACCTA	25	3.8788225E-5	45.000004	32
CGAATAT	25	3.8788225E-5	45.000004	14
CGTAAGC	25	3.8788225E-5	45.000004	43
GTGCAAG	40	6.7648216E-9	45.0	1
ATAGGGC	45	3.8198777E-10	45.0	4
CGACAGG	35	1.2049713E-7	45.0	2
CCGTCGA	20	7.018825E-4	45.0	41
ATGTACG	20	7.018825E-4	45.0	1
GTATGGT	20	7.018825E-4	45.0	3
GGAACAC	35	1.2049713E-7	45.0	8
CGAATGC	80	0.0	45.0	45