SRR3552065_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552065_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	461094
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3802	0.8245607186387158	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	739	0.16027100764703076	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	45	3.8380676E-10	45.0	1
GTATTCG	20	7.0288865E-4	45.0	1
CGTAAGG	70	0.0	41.785713	2
CGTTTTT	1630	0.0	40.72086	1
TCGGCGT	50	1.0786607E-9	40.5	4
GCGTCCC	50	1.0786607E-9	40.5	7
CGACGGT	40	3.4522236E-7	39.375	28
GTTAGCG	40	3.4522236E-7	39.375	1
TTAGCGG	120	0.0	39.374996	2
ACGTAGG	70	0.0	38.571426	2
GACGCAC	35	6.240154E-6	38.571426	9
GTAATGG	100	0.0	38.25	2
TAAGGGA	440	0.0	37.840908	4
CGAAAGG	60	1.546141E-10	37.499996	2
GTATGCG	30	1.13886184E-4	37.499996	1
AAACCGG	30	1.13886184E-4	37.499996	2
CATACGG	30	1.13886184E-4	37.499996	2
CTCGATC	30	1.13886184E-4	37.499996	16
CATCGTT	30	1.13886184E-4	37.499996	36
CGCACCC	30	1.13886184E-4	37.499996	30