##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552065_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 461094 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.39579348245694 33.0 31.0 34.0 31.0 34.0 2 32.53483671442265 34.0 31.0 34.0 31.0 34.0 3 32.559488954529876 34.0 31.0 34.0 31.0 34.0 4 36.00121233414445 37.0 35.0 37.0 35.0 37.0 5 36.0576910564874 37.0 35.0 37.0 35.0 37.0 6 36.0705083995888 37.0 36.0 37.0 35.0 37.0 7 36.17848638238624 37.0 37.0 37.0 35.0 37.0 8 35.936754761501994 37.0 37.0 37.0 35.0 37.0 9 37.71147314864214 39.0 38.0 39.0 35.0 39.0 10 37.59308947850113 39.0 37.0 39.0 35.0 39.0 11 37.62701314699389 39.0 37.0 39.0 35.0 39.0 12 37.56187024771522 39.0 37.0 39.0 35.0 39.0 13 37.548187571297824 39.0 37.0 39.0 35.0 39.0 14 38.858807531652985 40.0 38.0 41.0 35.0 41.0 15 38.96209883451097 40.0 38.0 41.0 35.0 41.0 16 39.01571046250873 40.0 38.0 41.0 35.0 41.0 17 38.98860102278494 40.0 38.0 41.0 35.0 41.0 18 38.8974460739025 40.0 38.0 41.0 35.0 41.0 19 38.82491856324307 40.0 38.0 41.0 35.0 41.0 20 38.74409990153851 40.0 38.0 41.0 35.0 41.0 21 38.69222978394861 40.0 38.0 41.0 35.0 41.0 22 38.68876411317432 40.0 38.0 41.0 35.0 41.0 23 38.653406897508965 40.0 38.0 41.0 35.0 41.0 24 38.603941929411356 40.0 38.0 41.0 35.0 41.0 25 38.480338065557135 40.0 38.0 41.0 35.0 41.0 26 38.490357714479046 40.0 38.0 41.0 35.0 41.0 27 38.468425093364914 40.0 38.0 41.0 35.0 41.0 28 38.407110046975234 40.0 37.0 41.0 35.0 41.0 29 38.37226032002152 40.0 37.0 41.0 35.0 41.0 30 38.256531206218256 40.0 37.0 41.0 34.0 41.0 31 38.200599010180134 40.0 37.0 41.0 34.0 41.0 32 38.06580436960793 40.0 37.0 41.0 34.0 41.0 33 37.95104035185884 40.0 37.0 41.0 34.0 41.0 34 37.82975705604497 40.0 37.0 41.0 34.0 41.0 35 37.716712861151954 40.0 37.0 41.0 33.0 41.0 36 37.61510451231202 40.0 37.0 41.0 33.0 41.0 37 37.57346875040664 40.0 37.0 41.0 33.0 41.0 38 37.4822552451344 40.0 36.0 41.0 33.0 41.0 39 37.43102491032197 40.0 36.0 41.0 33.0 41.0 40 37.32053117151817 40.0 36.0 41.0 33.0 41.0 41 37.246377094475314 40.0 36.0 41.0 33.0 41.0 42 37.21181798071543 40.0 35.0 41.0 33.0 41.0 43 37.14479043318716 40.0 35.0 41.0 32.0 41.0 44 37.06676295939656 40.0 35.0 41.0 32.0 41.0 45 36.98588140379185 40.0 35.0 41.0 32.0 41.0 46 36.908652031906726 40.0 35.0 41.0 32.0 41.0 47 36.836495378382715 39.0 35.0 41.0 32.0 41.0 48 36.76829019679285 39.0 35.0 41.0 31.0 41.0 49 36.70218870772554 39.0 35.0 41.0 31.0 41.0 50 36.604553518371524 39.0 35.0 41.0 31.0 41.0 51 35.823090302628096 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 6.0 10 8.0 11 11.0 12 10.0 13 17.0 14 15.0 15 27.0 16 43.0 17 67.0 18 98.0 19 162.0 20 262.0 21 431.0 22 662.0 23 1016.0 24 1500.0 25 2492.0 26 3728.0 27 4463.0 28 4728.0 29 4789.0 30 5188.0 31 6012.0 32 7697.0 33 10835.0 34 19676.0 35 29138.0 36 29175.0 37 42723.0 38 81964.0 39 203804.0 40 344.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.55029993884111 21.03757585221235 24.455750888105246 13.956373320841303 2 33.05876892781082 24.392423236910478 25.065387968613773 17.48341986666493 3 32.00366953376101 23.428845311368182 27.961760508703215 16.605724646167594 4 28.743379874819453 25.398725639457464 27.466199950552383 18.391694535170704 5 25.8741167744538 29.61890634013889 25.389833743228063 19.117143142179252 6 26.393967390597144 33.624380278207916 24.61255188746763 15.36910044372731 7 80.05352487779065 6.2720399744954385 9.438856285269381 4.235578862444534 8 81.9928257578715 5.376994712574876 8.81208603885542 3.8180934906982094 9 74.37116943616702 9.600428546023155 10.773291346233089 5.255110671576729 10 34.734999804812034 35.08720564570348 16.992413694387697 13.185380855096792 11 30.874398712626927 25.892984944501556 25.55552663881985 17.677089704051667 12 28.812346289476764 23.90879083223811 27.513261937912876 19.765600940372245 13 25.565719788155995 23.94284028853119 29.97479906483277 20.516640858480052 14 22.044962632348284 26.677206816831273 29.43434527449934 21.843485276321097 15 21.213461897140277 26.1625612131149 31.36171800110173 21.262258888643096 16 24.61732314885902 26.051954699041847 30.009716023197004 19.321006128902134 17 24.108966935158556 25.63620433143784 28.698269767119065 21.55655896628453 18 24.107231931016234 25.017675354699907 29.25065171093096 21.624441003352896 19 24.694313957674574 25.826187285022144 28.445392913375585 21.0341058439277 20 26.18077875660928 26.02788151656712 28.362763341097473 19.42857638572612 21 25.55682789192659 25.922480014921035 28.76571805315185 19.75497404000052 22 25.40219564774211 24.229332847532174 28.93184469977922 21.436626804946496 23 23.358794519121915 26.073859126338668 29.57509748554525 20.992248868994174 24 22.442278580940112 25.00466282363249 30.744056526434953 21.809002068992438 25 22.75306119793361 26.771330791552266 28.63168898315745 21.84391902735668 26 22.83113638433812 27.758981899569285 28.020967525059966 21.388914191032633 27 22.70903546782218 26.990158189002678 29.01187176584384 21.288934577331304 28 21.346623465063523 27.677219829362343 29.426320880341102 21.549835825233032 29 22.453989858900787 26.618650427027895 29.06956065357606 21.857799060495257 30 22.875812741002918 26.10725795607837 29.15522648310323 21.86170281981548 31 23.36204765188877 26.787813330904324 27.963712388363327 21.886426628843576 32 23.317805046259547 28.18535916754501 28.11704337944107 20.379792406754373 33 23.169028441055403 27.471188087461556 27.57658958910764 21.783193882375393 34 22.16359354057958 27.481164361279912 28.93835096531293 21.41689113282758 35 22.729421766494468 27.360147822352925 28.3399914117295 21.57043899942311 36 22.108507159060842 29.123128906470264 27.07799277370775 21.690371160761146 37 23.160570295861582 28.15326159091205 27.636230356499976 21.049937756726393 38 22.007876918806144 27.882384069191968 27.73555934364793 22.374179668353957 39 22.835907645729502 26.153018690332125 28.141984063986953 22.86908959995142 40 23.72010913176055 26.02462838380027 28.95071286982698 21.304549614612206 41 21.86734158327803 26.99341132176953 28.36710085145328 22.772146243499154 42 22.22323430797191 27.649242887567393 27.956772371794038 22.170750432666658 43 22.615995870690142 26.95806061236971 28.570096336105 21.855847180835145 44 22.338828958954142 27.39853478900181 27.677002953844553 22.5856332981995 45 21.725288119125384 26.734895704563495 27.96739927216576 23.572416904145356 46 21.452675593262978 28.428042871952357 27.469886834354817 22.64939470042985 47 22.15253288917227 27.388992266219038 28.46903234481472 21.989442499793967 48 21.535305165541082 27.055654595375344 28.762031169349417 22.647009069734153 49 21.901174164053316 26.719497542800386 28.579638858887773 22.799689434258525 50 20.699900671012852 27.014231371477397 28.920567172854124 23.365300784655624 51 21.509713854441827 26.23694951571697 28.067812636902673 24.18552399293853 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 128.0 1 408.0 2 688.0 3 3437.0 4 6186.0 5 4007.0 6 1828.0 7 1791.5 8 1755.0 9 1666.5 10 1578.0 11 1563.0 12 1548.0 13 1512.5 14 1477.0 15 1357.5 16 1238.0 17 1241.5 18 1245.0 19 1311.5 20 1378.0 21 2107.0 22 2836.0 23 2763.5 24 2691.0 25 3089.0 26 3844.5 27 4202.0 28 5349.0 29 6496.0 30 7520.5 31 8545.0 32 9424.5 33 10304.0 34 12086.5 35 13869.0 36 14626.5 37 15384.0 38 17266.0 39 19148.0 40 20959.5 41 22771.0 42 23501.0 43 24231.0 44 26164.0 45 28097.0 46 29793.5 47 31490.0 48 33132.5 49 34775.0 50 35287.5 51 35800.0 52 33604.0 53 31408.0 54 29521.0 55 27634.0 56 26429.5 57 25225.0 58 24218.0 59 23211.0 60 21913.0 61 20615.0 62 18754.0 63 16893.0 64 14676.0 65 12459.0 66 10187.5 67 7916.0 68 6237.5 69 4559.0 70 4022.5 71 3486.0 72 2704.0 73 1922.0 74 1568.5 75 989.5 76 764.0 77 571.0 78 378.0 79 265.5 80 153.0 81 94.0 82 35.0 83 26.5 84 18.0 85 16.5 86 15.0 87 7.5 88 0.0 89 6.0 90 12.0 91 6.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 461094.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.740508756973288 #Duplication Level Percentage of deduplicated Percentage of total 1 69.4666044634999 21.354387628274186 2 7.420606383898155 4.562264310525463 3 3.264486791422131 3.01055954396207 4 2.2701238888155792 2.791390531341983 5 1.9139405692981293 2.941775341541779 6 1.649313550835042 3.042044259146359 7 1.443929909459703 3.107099801834115 8 1.3187849697793779 3.243209672965418 9 1.1838494969993956 3.27529222465035 >10 9.995097932748065 49.185138069347055 >50 0.041965636421602164 0.8785425196425861 >100 0.029873842876394763 1.615398739452321 >500 7.112819732474943E-4 0.16158360428468668 >1k 7.112819732474943E-4 0.8313137530316357 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3802 0.8245607186387158 No Hit CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA 739 0.16027100764703076 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07720768433334635 0.0 2 0.0 0.0 0.0 0.29234819798132267 0.0 3 0.0 0.0 0.0 0.4229072596910825 0.0 4 0.0 0.0 0.0 0.5361162799776185 0.0 5 0.0 0.0 0.0 0.8475495235244874 0.0 6 0.0 0.0 0.0 1.1459702360039385 0.0 7 2.1687551779029873E-4 0.0 0.0 1.4103414921903126 0.0 8 2.1687551779029873E-4 0.0 0.0 1.8787926106173578 0.0 9 2.1687551779029873E-4 0.0 0.0 2.115837551562154 0.0 10 2.1687551779029873E-4 0.0 0.0 2.5576129813009927 0.0 11 2.1687551779029873E-4 0.0 0.0 3.1449118834771217 0.0 12 2.1687551779029873E-4 0.0 0.0 3.65912373615792 0.0 13 2.1687551779029873E-4 0.0 0.0 3.8874936563911047 0.0 14 2.1687551779029873E-4 0.0 0.0 4.000052050124269 0.0 15 2.1687551779029873E-4 0.0 0.0 4.170516207107444 0.0 16 2.1687551779029873E-4 0.0 0.0 4.482383201689894 0.0 17 2.1687551779029873E-4 0.0 0.0 4.825697146351937 0.0 18 2.1687551779029873E-4 0.0 0.0 5.214771825267733 0.0 19 2.1687551779029873E-4 0.0 0.0 5.467648679011221 0.0 20 2.1687551779029873E-4 0.0 0.0 5.717923026541226 0.0 21 2.1687551779029873E-4 0.0 0.0 6.019813747305322 0.0 22 2.1687551779029873E-4 0.0 0.0 6.329295111192078 0.0 23 2.1687551779029873E-4 0.0 0.0 6.627498948153739 0.0 24 4.3375103558059746E-4 0.0 0.0 6.899894598498354 0.0 25 4.3375103558059746E-4 0.0 0.0 7.136288912889779 0.0 26 4.3375103558059746E-4 0.0 0.0 7.378538866261543 0.0 27 4.3375103558059746E-4 0.0 0.0 7.608210039601469 0.0 28 4.3375103558059746E-4 0.0 0.0 7.855014378846829 0.0 29 4.3375103558059746E-4 0.0 0.0 8.100734340503237 0.0 30 4.3375103558059746E-4 0.0 0.0 8.403058812302914 0.0 31 4.3375103558059746E-4 0.0 0.0 8.666128815382546 0.0 32 4.3375103558059746E-4 0.0 0.0 8.953488876454692 0.0 33 4.3375103558059746E-4 0.0 0.0 9.21352262228526 0.0 34 4.3375103558059746E-4 0.0 0.0 9.462929467744104 0.0 35 4.3375103558059746E-4 0.0 0.0 9.740313254997897 0.0 36 4.3375103558059746E-4 0.0 0.0 10.030926448836897 0.0 37 4.3375103558059746E-4 0.0 0.0 10.305707729877206 0.0 38 4.3375103558059746E-4 0.0 0.0 10.610200956854785 0.0 39 4.3375103558059746E-4 0.0 0.0 10.91968232074154 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGCG 45 3.8380676E-10 45.0 1 GTATTCG 20 7.0288865E-4 45.0 1 CGTAAGG 70 0.0 41.785713 2 CGTTTTT 1630 0.0 40.72086 1 TCGGCGT 50 1.0786607E-9 40.5 4 GCGTCCC 50 1.0786607E-9 40.5 7 CGACGGT 40 3.4522236E-7 39.375 28 GTTAGCG 40 3.4522236E-7 39.375 1 TTAGCGG 120 0.0 39.374996 2 ACGTAGG 70 0.0 38.571426 2 GACGCAC 35 6.240154E-6 38.571426 9 GTAATGG 100 0.0 38.25 2 TAAGGGA 440 0.0 37.840908 4 CGAAAGG 60 1.546141E-10 37.499996 2 GTATGCG 30 1.13886184E-4 37.499996 1 AAACCGG 30 1.13886184E-4 37.499996 2 CATACGG 30 1.13886184E-4 37.499996 2 CTCGATC 30 1.13886184E-4 37.499996 16 CATCGTT 30 1.13886184E-4 37.499996 36 CGCACCC 30 1.13886184E-4 37.499996 30 >>END_MODULE