SRR3552059_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552059_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	431366
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTC	1856	0.4302610775999963	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCG	1754	0.40661526406809995	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGC	1754	0.40661526406809995	No Hit
GCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGC	1414	0.32779588562844547	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1065	0.24689011187715304	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTAATGACT	589	0.13654298206163676	No Hit
CCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGC	582	0.13492023015258503	TruSeq Adapter, Index 15 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGCT	506	0.11730178085430933	TruSeq Adapter, Index 14 (95% over 22bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	444	0.10292883537413704	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	20	7.028382E-4	45.0	33
ACTCGAG	20	7.028382E-4	45.0	1
CGTAAGC	20	7.028382E-4	45.0	43
ACCCGTT	20	7.028382E-4	45.0	16
AGTACGG	50	2.1827873E-11	45.0	2
ATCCGGC	55	6.002665E-11	40.909092	6
GATGAAT	705	0.0	40.212765	20
CTCGAAT	90	0.0	40.0	43
CGATGAA	640	0.0	39.726562	19
TTATAGG	80	0.0	39.375	2
GAACGCC	40	3.4515324E-7	39.375	29
GCGTAAG	40	3.4515324E-7	39.375	1
ACGGGCG	110	0.0	38.863636	5
CCGATGA	645	0.0	38.72093	18
ATGAATG	705	0.0	38.61702	21
ACAACGG	35	6.2392173E-6	38.571426	2
ATGGGTA	70	0.0	38.571426	5
GCGAACC	35	6.2392173E-6	38.571426	33
TAGCATA	35	6.2392173E-6	38.571426	30
TAGTGCG	35	6.2392173E-6	38.571426	1