SRR3552050_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552050_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	267334
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5307	1.985157144246523	No Hit
GCTGTCTCTTATACACATCTGACGCTGCCGATTTCGTATGCCGTCTTCTGC	409	0.15299213717671528	Illumina Paired End PCR Primer 2 (95% over 24bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	268	0.10024912656078164	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	20	7.023563E-4	45.000004	6
ACGTTGG	20	7.023563E-4	45.000004	2
TGTATCG	20	7.023563E-4	45.000004	44
GTTAACG	20	7.023563E-4	45.000004	1
AACGCCG	20	7.023563E-4	45.000004	13
ATGGTCG	20	7.023563E-4	45.000004	44
ATCGCCA	20	7.023563E-4	45.000004	24
CGCTTTA	20	7.023563E-4	45.000004	19
GGTAGCG	20	7.023563E-4	45.000004	1
CGCCAGT	20	7.023563E-4	45.000004	26
ACACGCG	85	0.0	45.0	36
TGTTGCG	35	1.2072451E-7	45.0	1
TCTAAAC	25	3.8827482E-5	45.0	34
GCTACGA	50	2.1827873E-11	45.0	10
CTCACGA	30	2.1592314E-6	44.999996	24
CGACGGT	30	2.1592314E-6	44.999996	28
CGTGCGG	30	2.1592314E-6	44.999996	2
TACGAGG	30	2.1592314E-6	44.999996	2
CGGTCTA	30	2.1592314E-6	44.999996	31
CGTTTTT	2770	0.0	43.05054	1