SRR3552044_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552044_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	260428
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7987	3.066874529620471	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTC	4086	1.5689557190471068	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCG	3609	1.3857956901715638	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGC	3539	1.3589168599382555	No Hit
GCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	1626	0.6243568279908458	Illumina Single End Adapter 1 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCT	852	0.3271537622682661	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCT	773	0.2968190824335325	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTC	618	0.23730167263120708	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAAACAGTTCGTA	584	0.22424624080360023	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	347	0.13324220129939945	No Hit
CCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	343	0.1317062681432104	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCT	302	0.11596295329227271	Illumina Single End Adapter 1 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTTTAC	20	7.023229E-4	45.0	18
CGTGACA	20	7.023229E-4	45.0	42
GCTTGCG	20	7.023229E-4	45.0	1
CGTTAGG	20	7.023229E-4	45.0	2
ACGTGAC	20	7.023229E-4	45.0	41
TAGGGTC	25	3.8824714E-5	45.0	5
GCGATAT	20	7.023229E-4	45.0	9
TATAGCG	20	7.023229E-4	45.0	1
GAGCACG	20	7.023229E-4	45.0	1
ACCCGAT	20	7.023229E-4	45.0	41
CAACTAC	20	7.023229E-4	45.0	16
CCCGATT	20	7.023229E-4	45.0	42
CACGACC	30	2.159015E-6	44.999996	27
TATACTG	60	0.0	44.999996	18
AACACGT	30	2.159015E-6	44.999996	41
CGTTTTT	3490	0.0	43.58166	1
ATAGGGC	65	0.0	41.53846	4
TACGAAT	65	0.0	41.53846	12
CGAATAT	65	0.0	41.53846	14
GCTACGA	65	0.0	41.53846	10