SRR3552040_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552040_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	245663
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5886	2.39596520436533	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	4346	1.7690901763798375	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG	4315	1.7564712634788309	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC	4003	1.6294680110557962	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	1436	0.5845406105111475	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT	873	0.355364869760607	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCT	831	0.3382682780882754	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTA	713	0.2902349967231532	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTC	697	0.2837220094194079	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTT	459	0.18684132327619543	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTT	279	0.11357021610905998	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATTCTA	25	3.881823E-5	45.000004	45
AGCTACG	25	3.881823E-5	45.000004	9
GTTGATC	35	1.2067176E-7	45.0	16
GGTACAC	20	7.022448E-4	45.0	8
CGAAAAA	35	1.2067176E-7	45.0	22
CGATTTA	20	7.022448E-4	45.0	10
ATGTCGA	20	7.022448E-4	45.0	11
CATACGA	35	1.2067176E-7	45.0	18
TAAGGCG	20	7.022448E-4	45.0	1
AATAGCG	20	7.022448E-4	45.0	1
TAAGCCT	20	7.022448E-4	45.0	45
CGTATGG	30	2.158511E-6	44.999996	2
CGTTTTT	3360	0.0	43.660713	1
TACGGCT	505	0.0	42.772274	7
TGATACC	560	0.0	41.785713	4
GATACCT	560	0.0	41.785713	5
GAATCTG	590	0.0	41.5678	1
ATACGGC	910	0.0	41.043957	6
GCGACTG	110	0.0	40.909092	11
TGATACG	915	0.0	40.81967	4