SRR3552038_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552038_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	383399
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3564	0.9295798893580839	No Hit
GCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	1428	0.372457935466707	No Hit
CCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	1172	0.30568676496287156	No Hit
CTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGCT	934	0.24361044238508708	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCC	887	0.23135167280039856	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	466	0.12154439630776293	No Hit
TCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	431	0.11241552534044168	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	40	6.7939254E-9	45.0	6
CATATTG	20	7.0273987E-4	45.0	19
GCGAAAT	20	7.0273987E-4	45.0	28
GTTTACG	25	3.885925E-5	45.0	1
ATCAGCG	20	7.0273987E-4	45.0	1
CTAAGTA	20	7.0273987E-4	45.0	22
AGGCGAA	25	3.885925E-5	45.0	26
TCCTAAT	20	7.0273987E-4	45.0	41
ATCGTGT	20	7.0273987E-4	45.0	38
TATTGCG	20	7.0273987E-4	45.0	1
TAGCACG	20	7.0273987E-4	45.0	1
CTAACGG	20	7.0273987E-4	45.0	2
CTAAATC	20	7.0273987E-4	45.0	16
TATTACG	20	7.0273987E-4	45.0	1
GCGATAT	40	6.7939254E-9	45.0	9
CGGTCTA	20	7.0273987E-4	45.0	31
TACAGCG	25	3.885925E-5	45.0	1
AGTCGTT	20	7.0273987E-4	45.0	38
ATAGTTA	30	2.1617034E-6	44.999996	37
TACGAAA	70	0.0	41.785713	20