SRR3552037_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552037_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	509170
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2184	0.42893336213838207	No Hit
GCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC	1097	0.2154486713671269	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCC	640	0.12569475813578962	No Hit
CTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGCT	544	0.10684054441542118	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	522	0.10251978710450341	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGAAT	85	0.0	45.000004	12
GTACCGG	20	7.029581E-4	45.0	2
ACGATAG	20	7.029581E-4	45.0	1
TCATCGG	20	7.029581E-4	45.0	2
CGCCGTT	20	7.029581E-4	45.0	26
TAGTGCG	40	6.8030204E-9	45.0	1
CGTCATA	20	7.029581E-4	45.0	38
CGTTTAC	20	7.029581E-4	45.0	33
TACCGGT	20	7.029581E-4	45.0	40
CGTAGCG	30	2.1631113E-6	44.999996	2
CGTAAGG	30	2.1631113E-6	44.999996	2
GTACTAG	50	1.0786607E-9	40.5	1
CGAAAGG	35	6.241433E-6	38.57143	2
CATACGG	35	6.241433E-6	38.57143	2
GCGATCT	35	6.241433E-6	38.57143	9
CGTTTTT	1180	0.0	38.51695	1
CGAATAT	100	0.0	38.25	14
TAACGGG	95	0.0	37.894737	3
ACGGGAT	150	0.0	37.5	5
AGATACG	30	1.1390292E-4	37.499996	1