##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552037_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 509170 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.356613704656596 33.0 31.0 34.0 30.0 34.0 2 32.42786692067482 34.0 31.0 34.0 31.0 34.0 3 32.44191527387709 34.0 31.0 34.0 30.0 34.0 4 35.9721232594222 37.0 35.0 37.0 35.0 37.0 5 36.03923444036373 37.0 35.0 37.0 35.0 37.0 6 36.01942966003496 37.0 35.0 37.0 35.0 37.0 7 36.20074238466524 37.0 36.0 37.0 35.0 37.0 8 36.04398138146395 37.0 36.0 37.0 35.0 37.0 9 37.917740636722506 39.0 38.0 39.0 35.0 39.0 10 37.60305398982658 39.0 37.0 39.0 35.0 39.0 11 37.56002906691282 39.0 37.0 39.0 35.0 39.0 12 37.45145432763124 39.0 37.0 39.0 35.0 39.0 13 37.43765343598405 39.0 37.0 39.0 35.0 39.0 14 38.68714574700002 40.0 38.0 41.0 35.0 41.0 15 38.75910599603276 40.0 38.0 41.0 35.0 41.0 16 38.740440324449594 40.0 38.0 41.0 35.0 41.0 17 38.69223049276273 40.0 38.0 41.0 35.0 41.0 18 38.61735569652572 40.0 38.0 41.0 35.0 41.0 19 38.56863522988393 40.0 38.0 41.0 35.0 41.0 20 38.527485908439225 40.0 38.0 41.0 35.0 41.0 21 38.40412239527073 40.0 37.0 41.0 34.0 41.0 22 38.428505214368485 40.0 37.0 41.0 34.0 41.0 23 38.3991888760139 40.0 37.0 41.0 34.0 41.0 24 38.331818449633715 40.0 37.0 41.0 34.0 41.0 25 38.16539269792015 40.0 37.0 41.0 34.0 41.0 26 38.185441011842805 40.0 37.0 41.0 34.0 41.0 27 38.187458019914764 40.0 37.0 41.0 34.0 41.0 28 38.136435768014614 40.0 37.0 41.0 34.0 41.0 29 38.09028615197282 40.0 36.0 41.0 34.0 41.0 30 37.91462969145865 40.0 36.0 41.0 34.0 41.0 31 37.889473064006125 40.0 36.0 41.0 34.0 41.0 32 37.784979476402775 40.0 36.0 41.0 33.0 41.0 33 37.683076379205374 40.0 36.0 41.0 33.0 41.0 34 37.56225032896675 40.0 36.0 41.0 33.0 41.0 35 37.44763634935287 40.0 35.0 41.0 33.0 41.0 36 37.372480703890645 40.0 35.0 41.0 33.0 41.0 37 37.36133707798967 40.0 35.0 41.0 33.0 41.0 38 37.26273543217393 40.0 35.0 41.0 33.0 41.0 39 37.207190132961486 40.0 35.0 41.0 33.0 41.0 40 37.105752499165305 40.0 35.0 41.0 32.0 41.0 41 37.026957597658935 39.0 35.0 41.0 32.0 41.0 42 36.94991456684408 39.0 35.0 41.0 32.0 41.0 43 36.82198283480959 39.0 35.0 41.0 32.0 41.0 44 36.816776322249936 39.0 35.0 41.0 32.0 41.0 45 36.77296777107842 39.0 35.0 41.0 32.0 41.0 46 36.68091403656932 39.0 35.0 41.0 32.0 41.0 47 36.61457666398256 39.0 35.0 41.0 32.0 41.0 48 36.56841722803779 39.0 35.0 41.0 31.0 41.0 49 36.527599819313785 39.0 35.0 41.0 31.0 41.0 50 36.43783215821828 38.0 35.0 41.0 31.0 41.0 51 35.59708938075692 37.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 4.0 10 4.0 11 12.0 12 6.0 13 17.0 14 16.0 15 23.0 16 41.0 17 72.0 18 103.0 19 181.0 20 308.0 21 512.0 22 732.0 23 1128.0 24 1682.0 25 2557.0 26 3611.0 27 4339.0 28 4777.0 29 5153.0 30 6100.0 31 7430.0 32 9694.0 33 13678.0 34 27598.0 35 40099.0 36 34762.0 37 52866.0 38 95922.0 39 195498.0 40 242.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.555845788243616 19.830704872635856 23.480173615884674 12.133275723235855 2 33.46799693619027 23.227409313195984 24.55682777854155 18.747765972072198 3 33.31480644971228 23.385509751163656 25.734626941885814 17.56505685723825 4 29.40432468527211 25.643891038356543 25.294302492291376 19.657481784079973 5 25.739144097256318 29.7305418622464 23.93326393935228 20.597050101145 6 26.857041852426498 34.29286878645639 23.421057799948937 15.429031561168175 7 79.53414380265923 6.508042500540094 9.364652277235502 4.593161419565175 8 79.5469096765324 5.967162244437025 9.270774004752832 5.215154074277746 9 72.57536775536659 8.24616532788656 11.872851896223265 7.305615020523597 10 39.37781094722784 26.37802698509339 18.680401437633794 15.563760630044976 11 32.19356992752911 24.53659877840407 23.725278394249464 19.54455289981735 12 28.166820511813345 22.63291238682562 29.134866547518513 20.065400553842526 13 25.887228234185045 23.46937172260738 29.629986055737767 21.013413987469804 14 21.73517685645266 26.37586660643793 29.351100811123988 22.537855725985427 15 21.308011076850562 24.973388062925938 32.525679046291025 21.19292181393248 16 23.698175462026434 23.884360822515074 30.751811772099693 21.6656519433588 17 23.771824734371624 23.88809238564723 28.30096038651138 24.039122493469765 18 24.497908360665395 24.171887581750692 28.683151010468016 22.647053047115897 19 25.300980026317337 25.341634424651883 27.00689357189151 22.350491977139267 20 26.95268770744545 24.499283147082508 27.332914350806213 21.21511479466583 21 26.228764459807135 25.969322623092484 26.782803385902547 21.019109531197834 22 24.530706836616453 24.61653278865605 26.372527839424947 24.48023253530255 23 23.767503977060706 26.300646149616043 27.265157020248644 22.66669285307461 24 23.788714967496123 24.08802561030697 28.81552330262977 23.30773611956714 25 23.81797827837461 25.61757369837186 26.92911994029499 23.63532808295854 26 22.739949329300625 26.1527584107469 27.75124221772689 23.356050042225583 27 23.572480703890644 25.551976746469744 27.59844452736807 23.277098022271538 28 21.701592788263252 26.639236404344324 28.308423512775693 23.35074729461673 29 24.25614234931359 25.817899719150777 26.5661763261779 23.35978160535774 30 23.526719956006833 25.154270675805723 27.83824655812401 23.480762810063435 31 24.49692637036746 25.804151854979672 25.43688748355166 24.2620342911012 32 24.752833042009545 26.186735275055483 25.457705677867903 23.60272600506707 33 23.970186774554666 26.463460141013805 25.67177956281792 23.89457352161361 34 23.00783628257753 26.278845965001867 26.532395859928904 24.180921892491703 35 22.904530903234676 25.49050415381896 26.623131763458176 24.981833179488184 36 22.926723883968027 28.147966298092975 26.034919574994596 22.8903902429444 37 23.074808020896754 27.35903529273131 26.09855254630084 23.467604140071096 38 21.916845061570793 27.21802148594772 25.68611662116778 25.179016831313707 39 23.383742168627375 26.262152129936954 26.41239664552114 23.94170905591453 40 23.86157864760296 25.13718404462164 28.096706404540722 22.904530903234676 41 20.987685841663883 26.357994383015498 27.805448082172944 24.84887169314767 42 22.651766600545987 25.236561462772748 27.381228273464657 24.730443663216608 43 23.21582182768034 24.743995129328123 27.215271913113497 24.824911129878036 44 22.39036078323546 25.476167095469098 26.86450497869081 25.26896714260463 45 23.31657403224856 25.017577626333054 25.797867117072883 25.867981224345506 46 23.017852583616474 26.890625920615907 25.81043659288646 24.281084902881158 47 22.057466072235208 26.159043148653694 28.048196083822692 23.73529469528841 48 21.756387846888074 24.548579060038886 28.43097590195809 25.26405719111495 49 22.121099043541452 24.914272246990198 28.514248679223048 24.4503800302453 50 21.00948602627806 25.22222440442288 28.354184260659505 25.414105308639552 51 20.82781782115993 24.699412769801835 27.011017931142838 27.461751477895397 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 253.0 1 612.5 2 972.0 3 2393.0 4 3814.0 5 2587.5 6 1361.0 7 1367.5 8 1374.0 9 1345.0 10 1316.0 11 1334.0 12 1352.0 13 1356.0 14 1360.0 15 1289.0 16 1218.0 17 1305.0 18 1392.0 19 1352.5 20 1313.0 21 1415.0 22 1517.0 23 1818.0 24 2119.0 25 2490.0 26 3694.0 27 4527.0 28 5136.0 29 5745.0 30 6283.5 31 6822.0 32 7796.5 33 8771.0 34 10318.5 35 11866.0 36 12235.0 37 12604.0 38 14126.0 39 15648.0 40 17890.0 41 20132.0 42 22091.0 43 24050.0 44 26486.0 45 28922.0 46 33014.0 47 37106.0 48 40062.5 49 43019.0 50 43242.5 51 43466.0 52 40000.5 53 36535.0 54 34069.5 55 31604.0 56 30127.0 57 28650.0 58 27371.5 59 26093.0 60 26202.5 61 26312.0 62 24067.5 63 21823.0 64 19478.5 65 17134.0 66 14524.5 67 11915.0 68 9861.0 69 7807.0 70 6542.5 71 5278.0 72 4843.0 73 4408.0 74 3681.5 75 2446.0 76 1937.0 77 1473.5 78 1010.0 79 717.0 80 424.0 81 346.0 82 268.0 83 171.0 84 74.0 85 50.5 86 27.0 87 18.5 88 10.0 89 6.0 90 2.0 91 2.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 509170.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.024956935265802 #Duplication Level Percentage of deduplicated Percentage of total 1 71.92766429681117 21.596250229660107 2 8.329487947274371 5.00185033819457 3 3.157612161971716 2.8442150754441697 4 1.7818929586808334 2.1400503739058157 5 1.3742280332468941 2.0630568758736505 6 1.1399095153130627 2.053544046442466 7 0.9812237923177419 2.062284147573888 8 0.8786211969434523 2.1104450880511076 9 0.8239471812092265 2.2265080769466605 >10 9.47344204364069 52.94975671665421 >50 0.0879805817272327 1.8203474687338141 >100 0.04070743333648081 2.1485777628037517 >500 0.0019697145162813293 0.33631284185183963 >1k 0.0013131430108542196 0.6468009578639424 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2184 0.42893336213838207 No Hit GCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC 1097 0.2154486713671269 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCC 640 0.12569475813578962 No Hit CTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGCT 544 0.10684054441542118 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 522 0.10251978710450341 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11135769978592612 0.0 2 0.0 0.0 0.0 0.5416658483414184 0.0 3 0.0 0.0 0.0 0.7588821022448298 0.0 4 0.0 0.0 0.0 1.0923660074238466 0.0 5 0.0 0.0 0.0 2.027417169118369 0.0 6 0.0 0.0 0.0 2.617789736237406 0.0 7 0.0 0.0 0.0 3.1940216430661663 0.0 8 0.0 0.0 0.0 4.141838678633855 0.0 9 0.0 0.0 0.0 4.586876681658385 0.0 10 0.0 0.0 0.0 5.448082172948132 0.0 11 0.0 0.0 0.0 6.479957578019129 0.0 12 0.0 0.0 0.0 7.297366302020936 0.0 13 0.0 0.0 0.0 7.615923954671328 0.0 14 0.0 0.0 0.0 7.755955771156981 0.0 15 0.0 0.0 0.0 8.0511420547165 0.0 16 0.0 0.0 0.0 8.579060038886816 0.0 17 0.0 0.0 0.0 9.193785965394662 0.0 18 0.0 0.0 0.0 9.888053106035313 0.0 19 0.0 0.0 0.0 10.282420409686353 0.0 20 0.0 0.0 0.0 10.670895771549777 0.0 21 0.0 0.0 0.0 11.112595007561325 0.0 22 0.0 0.0 0.0 11.589645894298565 0.0 23 0.0 0.0 0.0 12.074356305359704 0.0 24 0.0 0.0 0.0 12.475008346917532 0.0 25 0.0 0.0 0.0 12.820472533731367 0.0 26 0.0 0.0 0.0 13.165151128306853 0.0 27 0.0 0.0 0.0 13.487243946029814 0.0 28 0.0 0.0 0.0 13.837618084333327 0.0 29 0.0 0.0 0.0 14.166781232201426 0.0 30 0.0 0.0 0.0 14.577449574798202 0.0 31 0.0 0.0 0.0 14.970442092032131 0.0 32 0.0 0.0 0.0 15.34124162853271 0.0 33 0.0 0.0 0.0 15.698293300862188 0.0 34 0.0 0.0 0.0 16.04532867215272 0.0 35 0.0 0.0 0.0 16.41534261641495 0.0 36 0.0 0.0 0.0 16.781624997545023 0.0 37 0.0 0.0 0.0 17.14731818449634 0.0 38 0.0 0.0 0.0 17.54089989590903 0.0 39 0.0 0.0 0.0 17.92387611210401 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGAAT 85 0.0 45.000004 12 GTACCGG 20 7.029581E-4 45.0 2 ACGATAG 20 7.029581E-4 45.0 1 TCATCGG 20 7.029581E-4 45.0 2 CGCCGTT 20 7.029581E-4 45.0 26 TAGTGCG 40 6.8030204E-9 45.0 1 CGTCATA 20 7.029581E-4 45.0 38 CGTTTAC 20 7.029581E-4 45.0 33 TACCGGT 20 7.029581E-4 45.0 40 CGTAGCG 30 2.1631113E-6 44.999996 2 CGTAAGG 30 2.1631113E-6 44.999996 2 GTACTAG 50 1.0786607E-9 40.5 1 CGAAAGG 35 6.241433E-6 38.57143 2 CATACGG 35 6.241433E-6 38.57143 2 GCGATCT 35 6.241433E-6 38.57143 9 CGTTTTT 1180 0.0 38.51695 1 CGAATAT 100 0.0 38.25 14 TAACGGG 95 0.0 37.894737 3 ACGGGAT 150 0.0 37.5 5 AGATACG 30 1.1390292E-4 37.499996 1 >>END_MODULE