SRR3552028_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552028_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	409274
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1846	0.4510425778329432	No Hit
GCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	961	0.23480602237132092	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCG	787	0.19229171655174773	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTC	726	0.1773872760058054	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGC	645	0.15759613364152134	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	615	0.1502660809140087	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCC	594	0.14513504400474989	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	488	0.11923552436753862	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	457	0.1116611365491089	No Hit
CTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGCT	431	0.10530842418526463	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	424	0.10359807854884502	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGGGC	140	0.0	45.000004	4
TACGGTT	35	1.2093733E-7	45.000004	33
ACGGTTA	35	1.2093733E-7	45.000004	34
ACCGAGC	20	7.0279575E-4	45.0	33
TAACCGG	20	7.0279575E-4	45.0	2
TATAGCG	20	7.0279575E-4	45.0	1
ATCGCAT	20	7.0279575E-4	45.0	10
GTACGAG	20	7.0279575E-4	45.0	1
AACACGT	55	1.8189894E-12	45.0	41
CGTAAGG	30	2.1620635E-6	44.999996	2
TACGAAT	80	0.0	42.1875	12
CGAATAT	80	0.0	42.1875	14
ACACGTG	60	3.6379788E-12	41.249996	42
TTAGGGT	115	0.0	41.08696	4
CACGACC	55	6.002665E-11	40.909092	27
CGAAAGG	50	1.0786607E-9	40.5	2
TATGGGT	50	1.0786607E-9	40.5	4
ATAGCGG	50	1.0786607E-9	40.5	2
CTATGCT	85	0.0	39.705883	36
CTCGTAC	40	3.4509503E-7	39.375	29