SRR3552022_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552022_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	370765
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4297	1.158955133305463	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCC	762	0.20552101735600717	No Hit
GCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	650	0.17531320378137094	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGCT	483	0.1302711960406187	Illumina Single End Adapter 2 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	373	0.10060280770838673	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTC	20	7.0270966E-4	45.000004	45
ACGTTAG	20	7.0270966E-4	45.000004	1
TACGATG	20	7.0270966E-4	45.000004	1
TTAAGCG	20	7.0270966E-4	45.000004	1
TATAGCG	20	7.0270966E-4	45.000004	1
CGTAAAT	20	7.0270966E-4	45.000004	14
CAATGCG	20	7.0270966E-4	45.000004	1
GTTAGCG	25	3.885677E-5	45.0	1
GCTTACG	25	3.885677E-5	45.0	1
CGAATAT	45	3.8380676E-10	45.0	14
CGTTTTT	2025	0.0	41.666668	1
CACGCCG	50	1.0768417E-9	40.5	26
CGTTAGG	50	1.0768417E-9	40.5	2
TACGAAT	50	1.0768417E-9	40.5	12
GGACGAA	35	6.2368454E-6	38.571426	8
TTACGGG	135	0.0	38.333332	3
AACGGGC	65	9.094947E-12	38.076927	4
AGACACG	95	0.0	37.894737	24
TACGGGA	155	0.0	37.741936	4
CGTATGG	30	1.13843074E-4	37.500004	2