SRR3552021_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552021_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	328109
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5296	1.6140977541000097	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	1219	0.37152287806795914	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCG	884	0.2694226613716783	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCC	826	0.25174560892874015	No Hit
CTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGCT	809	0.24656440390236173	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGC	722	0.2200488252379545	No Hit
CCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	705	0.21486762021157602	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTC	668	0.2035908798600465	No Hit
TCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	517	0.15756958815515576	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	432	0.1316635630232636	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	391	0.11916771560670388	No Hit
ACTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	355	0.1081957520214319	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	337	0.10270977022879592	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCAAT	25	3.8846927E-5	45.0	17
GACCCAC	40	6.7902874E-9	45.0	12
TGTTGCG	25	3.8846927E-5	45.0	1
ACGATTG	25	3.8846927E-5	45.0	1
TCTACTC	20	7.0259115E-4	45.0	28
CGGGATA	20	7.0259115E-4	45.0	6
TCGTAAG	20	7.0259115E-4	45.0	1
CGAGCCA	20	7.0259115E-4	45.0	24
CCGACAG	20	7.0259115E-4	45.0	1
CGTAAGG	40	6.7902874E-9	45.0	2
TATAGAG	35	1.2083729E-7	45.0	1
CACAACG	25	3.8846927E-5	45.0	12
ACATAGT	40	6.7902874E-9	45.0	35
GGTAGTC	20	7.0259115E-4	45.0	8
ATAGCGG	30	2.160743E-6	44.999996	2
CTACGAA	60	0.0	44.999996	11
TACGAAT	60	0.0	44.999996	12
CGAATAT	60	0.0	44.999996	14
CGTTTTT	2465	0.0	43.63083	1
ACCTATG	65	0.0	41.538464	34