##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552021_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 328109 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.25237344906723 33.0 31.0 34.0 30.0 34.0 2 32.351200363293906 34.0 31.0 34.0 30.0 34.0 3 32.32411789984426 34.0 31.0 34.0 30.0 34.0 4 35.9203862131182 37.0 35.0 37.0 35.0 37.0 5 35.99458106909594 37.0 35.0 37.0 35.0 37.0 6 35.99944835405307 37.0 35.0 37.0 35.0 37.0 7 36.17389647952357 37.0 36.0 37.0 35.0 37.0 8 35.99452316151035 37.0 35.0 37.0 35.0 37.0 9 37.904687161888276 39.0 38.0 39.0 35.0 39.0 10 37.632993913607976 39.0 37.0 39.0 35.0 39.0 11 37.598316413143195 39.0 37.0 39.0 35.0 39.0 12 37.509608087556266 39.0 37.0 39.0 35.0 39.0 13 37.48048666754036 39.0 37.0 39.0 35.0 39.0 14 38.70460121484019 40.0 38.0 41.0 35.0 41.0 15 38.75622125574123 40.0 38.0 41.0 35.0 41.0 16 38.769527809356035 40.0 38.0 41.0 35.0 41.0 17 38.73342700139283 40.0 38.0 41.0 35.0 41.0 18 38.59151684348799 40.0 38.0 41.0 35.0 41.0 19 38.430131450219285 40.0 37.0 41.0 35.0 41.0 20 38.263452084520694 40.0 36.0 41.0 34.0 41.0 21 38.126826755742755 40.0 36.0 41.0 34.0 41.0 22 38.15288516925778 40.0 36.0 41.0 34.0 41.0 23 38.138679524182514 40.0 36.0 41.0 34.0 41.0 24 38.0583098909204 40.0 35.0 41.0 34.0 41.0 25 37.88690038980948 40.0 35.0 41.0 34.0 41.0 26 37.91461374116528 40.0 35.0 41.0 34.0 41.0 27 37.89226750866328 40.0 35.0 41.0 34.0 41.0 28 37.79581175767809 40.0 35.0 41.0 34.0 41.0 29 37.722128926667665 40.0 35.0 41.0 34.0 41.0 30 37.52959230011978 40.0 35.0 41.0 33.0 41.0 31 37.40324709166771 40.0 35.0 41.0 33.0 41.0 32 37.17177828099808 40.0 35.0 41.0 33.0 41.0 33 36.94439347899631 40.0 35.0 41.0 32.0 41.0 34 36.73675821144803 40.0 35.0 41.0 31.0 41.0 35 36.59376609602297 40.0 35.0 41.0 31.0 41.0 36 36.459204105952594 39.0 35.0 41.0 30.0 41.0 37 36.40391150501815 39.0 35.0 41.0 30.0 41.0 38 36.297568795735565 39.0 35.0 41.0 30.0 41.0 39 36.266972256170966 39.0 35.0 41.0 30.0 41.0 40 36.16205894992213 39.0 35.0 41.0 30.0 41.0 41 36.08243297196968 39.0 35.0 41.0 29.0 41.0 42 35.96929069303189 39.0 35.0 41.0 29.0 41.0 43 35.85822394387231 39.0 35.0 41.0 29.0 41.0 44 35.880155679972205 39.0 35.0 41.0 29.0 41.0 45 35.85739495106809 39.0 35.0 41.0 29.0 41.0 46 35.768512902724396 39.0 35.0 41.0 29.0 41.0 47 35.724484851070834 39.0 35.0 41.0 29.0 41.0 48 35.712507124156915 38.0 35.0 41.0 29.0 41.0 49 35.68342837288828 38.0 35.0 41.0 28.0 41.0 50 35.595622186529475 38.0 35.0 41.0 28.0 41.0 51 34.81099268840538 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 7.0 11 6.0 12 7.0 13 10.0 14 16.0 15 12.0 16 31.0 17 34.0 18 78.0 19 153.0 20 266.0 21 423.0 22 717.0 23 1068.0 24 1768.0 25 2769.0 26 4150.0 27 5104.0 28 4814.0 29 4701.0 30 4783.0 31 5283.0 32 6685.0 33 8972.0 34 17423.0 35 26238.0 36 23776.0 37 32479.0 38 60155.0 39 116048.0 40 129.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.95072064466382 19.50297004958718 22.88721126211107 16.659098043637936 2 36.07063506334785 23.996598691288565 23.238923650372286 16.6938425949913 3 31.41334129816616 22.722631808331986 30.292067575104614 15.57195931839724 4 28.165944853691915 23.025884690758254 30.429826673453032 18.378343782096803 5 24.944149657583303 26.611583345778385 28.850168693940127 19.59409830269819 6 25.0346683571618 32.347482086745565 27.96448741119567 14.65336214489697 7 72.56856715298879 6.438409187190842 15.88344117351246 5.109582486307904 8 72.23056971920917 6.712098723290126 15.251943713826806 5.805387843673901 9 65.41118957419638 8.639506993102902 17.75172275067127 8.197580682029447 10 36.49549387551088 24.298632466649803 23.729919020813206 15.47595463702611 11 29.316172369547928 23.167605887068017 28.53167697320098 18.984544770183078 12 26.38635331551405 20.804976395039454 33.674480127030954 19.13419016241554 13 23.844515084926048 23.077696741022038 34.556808865346575 18.52097930870534 14 19.779097799816526 26.87765346272123 32.69888969824052 20.644359039221722 15 18.573705689267896 23.873164100954256 37.81670115723738 19.736429052540466 16 19.631585844947868 23.764054018634052 35.31052180830151 21.29383832811657 17 20.132334071909032 23.06428656330671 32.796723040209194 24.006656324575065 18 20.99393799011914 23.617456394064167 33.79517172646895 21.593433889347747 19 23.007293308016543 24.31295697466391 31.802541228677057 20.87720848864249 20 24.847230645913402 24.00238944984746 32.060382372930945 19.089997531308192 21 22.112163945518105 25.56772292134626 32.66627858425096 19.653834548884667 22 20.35695454864085 24.548549414980997 31.060105026073654 24.0343910103045 23 21.480666485832455 25.049297641942157 31.784864176234116 21.685171695991272 24 21.921678466607133 23.564425236735353 32.22861914790512 22.285277148752396 25 20.585232346567757 25.928883389361463 30.851332941187227 22.634551322883553 26 20.03023385521275 26.091329405776737 31.91256564129603 21.96587109771448 27 22.74853783346388 25.43148770682913 30.992139807198214 20.82783465250877 28 19.525828307056496 25.666165816847453 33.25845984108939 21.54954603500666 29 21.70406785549924 24.847230645913402 31.25973380797235 22.18896769061501 30 22.605597530089085 25.087699514490613 29.95346058779247 22.353242367627832 31 22.614131279544296 25.98313365375531 28.501504073341483 22.901230993358915 32 23.71833750369542 27.401259947151708 27.652700779314195 21.22770176983868 33 22.373967187733346 25.407410342294785 28.316199799456886 23.90242267051498 34 21.450493585972954 25.281842314596677 29.092770999881136 24.174893099549237 35 22.776577295959573 25.66494670978242 27.577116141282314 23.981359852975686 36 22.210911617785552 27.35493387868056 28.63377718989726 21.800377313636627 37 23.0277133513558 26.31930242693739 29.254912239530157 21.398071982176656 38 21.638540850753866 27.221441655059753 27.448805122687887 23.691212371498498 39 23.282506727947116 23.630257018246986 28.78829901038984 24.29893724341606 40 21.65652267996306 24.64424931958587 29.62917810849443 24.070049891956636 41 19.454815320518488 26.900511720190543 28.996461541743752 24.648211417547216 42 20.894580764319173 25.88956718651424 30.60415898375235 22.611693065414237 43 23.353214937718867 23.58240706594455 30.33260288501687 22.731775111319713 44 22.22645523286469 23.844210308159788 29.363412768317847 24.565921690657678 45 22.588225254412407 23.44403841406362 27.982164463638608 25.985571867885366 46 22.544946953603834 25.66494670978242 28.29974185407898 23.49036448253477 47 20.463016863298478 24.792066051220786 31.641619096093066 23.103297989387674 48 20.457226104739583 24.12064283515539 30.542594076968328 24.879536983136703 49 21.043616603019117 22.985349380846 32.21277075605972 23.758263260075157 50 20.287160669167868 22.888735145942356 31.575787314581433 25.24831687030834 51 20.08265545900905 22.893306797436217 28.880646370565877 28.14339137298885 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 246.0 1 535.0 2 824.0 3 4521.5 4 8219.0 5 5276.0 6 2333.0 7 2232.0 8 2131.0 9 2119.5 10 2108.0 11 2070.0 12 2032.0 13 2035.5 14 2039.0 15 1941.5 16 1844.0 17 1758.0 18 1672.0 19 1726.5 20 1781.0 21 1723.5 22 1666.0 23 1685.0 24 1704.0 25 1944.0 26 2626.5 27 3069.0 28 3691.5 29 4314.0 30 4603.5 31 4893.0 32 5087.5 33 5282.0 34 5859.5 35 6437.0 36 7175.5 37 7914.0 38 8261.0 39 8608.0 40 10144.5 41 11681.0 42 13573.0 43 15465.0 44 17585.0 45 19705.0 46 23627.5 47 27550.0 48 29646.0 49 31742.0 50 31096.5 51 30451.0 52 27048.0 53 23645.0 54 20703.0 55 17761.0 56 16249.5 57 14738.0 58 14146.0 59 13554.0 60 13044.0 61 12534.0 62 11326.0 63 10118.0 64 8965.0 65 7812.0 66 6808.0 67 5804.0 68 5039.0 69 4274.0 70 3891.0 71 3508.0 72 3002.0 73 2496.0 74 2146.5 75 1383.0 76 969.0 77 833.5 78 698.0 79 487.5 80 277.0 81 225.0 82 173.0 83 99.0 84 25.0 85 15.5 86 6.0 87 12.5 88 19.0 89 11.0 90 3.0 91 3.0 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 328109.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.48878746651814 #Duplication Level Percentage of deduplicated Percentage of total 1 69.74177926978497 22.658258442328645 2 11.090607759426039 7.206407967410191 3 3.942229034345749 3.8423472372358827 4 2.1011936032447758 2.730609296073078 5 1.4862074591585401 2.414253913587787 6 1.089726771423182 2.124234088400565 7 0.9583107377728041 2.179404772046798 8 0.8577932090620778 2.2294929007552327 9 0.8120159167436444 2.3743271284662733 >10 7.785795445113493 44.18657866618212 >50 0.08159959334687471 1.7846239741118388 >100 0.043785147649542534 2.504292989759113 >500 0.006965818944245403 1.6588597121680877 >1k 9.951169920350575E-4 0.39410446094969775 >5k 9.951169920350575E-4 1.7122044505246916 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5296 1.6140977541000097 No Hit GCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC 1219 0.37152287806795914 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCG 884 0.2694226613716783 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCC 826 0.25174560892874015 No Hit CTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGCT 809 0.24656440390236173 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGC 722 0.2200488252379545 No Hit CCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC 705 0.21486762021157602 No Hit GAATCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTC 668 0.2035908798600465 No Hit TCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC 517 0.15756958815515576 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 432 0.1316635630232636 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 391 0.11916771560670388 No Hit ACTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC 355 0.1081957520214319 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 337 0.10270977022879592 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.25692681395511857 0.0 2 0.0 0.0 0.0 1.1392555522707393 0.0 3 0.0 0.0 0.0 1.569905122992664 0.0 4 0.0 0.0 0.0 2.1773252181439706 0.0 5 0.0 0.0 0.0 3.8514639951967182 0.0 6 0.0 0.0 0.0 4.702705503354069 0.0 7 0.0 0.0 0.0 5.63227464043961 0.0 8 0.0 0.0 0.0 6.965977769582669 0.0 9 0.0 0.0 0.0 7.567302329408824 0.0 10 0.0 0.0 0.0 9.072899554721145 0.0 11 0.0 0.0 0.0 10.881444885693474 0.0 12 0.0 0.0 0.0 12.470855721726622 0.0 13 0.0 0.0 0.0 12.994766982923357 0.0 14 0.0 0.0 0.0 13.210244156667448 0.0 15 0.0 0.0 0.0 13.70611595536849 0.0 16 0.0 0.0 0.0 14.557967017058356 0.0 17 0.0 0.0 0.0 15.547272400330378 0.0 18 0.0 0.0 0.0 16.693233041458782 0.0 19 0.0 0.0 0.0 17.318025412286772 0.0 20 0.0 0.0 0.0 17.915387874151577 0.0 21 0.0 0.0 0.0 18.61058367798506 0.0 22 0.0 0.0 0.0 19.287797652609346 0.0 23 0.0 0.0 0.0 20.008289928042206 0.0 24 0.0 0.0 0.0 20.548049581084335 0.0 25 0.0 0.0 0.0 21.036606737395196 0.0 26 0.0 0.0 0.0 21.517544474549616 0.0 27 0.0 0.0 0.0 21.94575583114148 0.0 28 3.047767662575547E-4 0.0 0.0 22.42425535416584 0.0 29 3.047767662575547E-4 0.0 0.0 22.86435300464175 0.0 30 3.047767662575547E-4 0.0 0.0 23.373634981058125 0.0 31 3.047767662575547E-4 0.0 0.0 23.86889722622665 0.0 32 3.047767662575547E-4 0.0 0.0 24.356844829004995 0.0 33 3.047767662575547E-4 0.0 0.0 24.78749439972692 0.0 34 3.047767662575547E-4 0.0 0.0 25.246792986477054 0.0 35 3.047767662575547E-4 0.0 0.0 25.711882331786082 0.0 36 3.047767662575547E-4 0.0 0.0 26.18245765888775 0.0 37 3.047767662575547E-4 0.0 0.0 26.651204325391866 0.0 38 3.047767662575547E-4 0.0 0.0 27.083987333477594 0.0 39 3.047767662575547E-4 0.0 0.0 27.504884047679276 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGCAAT 25 3.8846927E-5 45.0 17 GACCCAC 40 6.7902874E-9 45.0 12 TGTTGCG 25 3.8846927E-5 45.0 1 ACGATTG 25 3.8846927E-5 45.0 1 TCTACTC 20 7.0259115E-4 45.0 28 CGGGATA 20 7.0259115E-4 45.0 6 TCGTAAG 20 7.0259115E-4 45.0 1 CGAGCCA 20 7.0259115E-4 45.0 24 CCGACAG 20 7.0259115E-4 45.0 1 CGTAAGG 40 6.7902874E-9 45.0 2 TATAGAG 35 1.2083729E-7 45.0 1 CACAACG 25 3.8846927E-5 45.0 12 ACATAGT 40 6.7902874E-9 45.0 35 GGTAGTC 20 7.0259115E-4 45.0 8 ATAGCGG 30 2.160743E-6 44.999996 2 CTACGAA 60 0.0 44.999996 11 TACGAAT 60 0.0 44.999996 12 CGAATAT 60 0.0 44.999996 14 CGTTTTT 2465 0.0 43.63083 1 ACCTATG 65 0.0 41.538464 34 >>END_MODULE