SRR3552020_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552020_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	525707
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5796	1.1025152794237094	No Hit
GCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC	1341	0.25508505688529926	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCC	1185	0.22541073259439193	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCG	1106	0.21038335042143247	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTC	1019	0.19383420802842646	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGC	965	0.18356232654311241	No Hit
CTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGCT	838	0.1594043830498738	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC	645	0.1226919177412513	TruSeq Adapter, Index 16 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	558	0.1061427753482453	No Hit
TCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC	549	0.10443079510069296	TruSeq Adapter, Index 16 (95% over 21bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	548	0.10424057507318715	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAG	30	2.1632459E-6	45.000004	1
TTATGCG	25	3.887908E-5	45.0	1
TAACGCG	25	3.887908E-5	45.0	1
CTACGAA	90	0.0	45.0	11
CGAATAT	90	0.0	45.0	14
TCATACG	20	7.029791E-4	45.0	31
TAGTGCG	25	3.887908E-5	45.0	1
TCGACTC	20	7.029791E-4	45.0	28
CGTCATA	20	7.029791E-4	45.0	37
TTCGACT	20	7.029791E-4	45.0	27
TTCGAAT	20	7.029791E-4	45.0	16
AGTACGC	20	7.029791E-4	45.0	1
GCTACGA	95	0.0	42.63158	10
TACGGGA	235	0.0	41.17021	4
CGTTTTT	2280	0.0	40.55921	1
GACCTAT	85	0.0	39.705883	33
AGGTACG	40	3.4534423E-7	39.375	1
GGATCGA	40	3.4534423E-7	39.375	8
AGTACGG	115	0.0	39.130432	2
TACGAAT	110	0.0	38.863636	12