SRR3552019_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552019_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	157394
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3072	1.9517897759762124	No Hit
GCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC	510	0.3240275995273009	TruSeq Adapter, Index 20 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCC	485	0.3081438936681195	No Hit
CTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGCT	379	0.24079698082519027	TruSeq Adapter, Index 27 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC	341	0.21665374791923453	TruSeq Adapter, Index 20 (95% over 21bp)
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	246	0.15629566565434513	No Hit
TCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC	224	0.1423180044982655	TruSeq Adapter, Index 20 (95% over 21bp)
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	219	0.13914126332642923	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	202	0.12834034334218586	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	191	0.12135151276414602	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	189	0.12008081629541151	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGC	172	0.10927989631116813	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	161	0.10229106573312832	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	158	0.10038502103002656	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTAAG	20	7.014718E-4	45.000004	1
GGTACTT	30	2.1535325E-6	45.000004	7
AAATCAC	20	7.014718E-4	45.000004	19
CATATTA	40	6.7502697E-9	45.000004	28
ATTAGTC	30	2.1535325E-6	45.000004	31
CGTCTCG	20	7.014718E-4	45.000004	42
TCGATGG	20	7.014718E-4	45.000004	2
TGCGCCA	20	7.014718E-4	45.000004	19
CAAGGGT	20	7.014718E-4	45.000004	4
TAGATGA	20	7.014718E-4	45.000004	16
TATCGCG	20	7.014718E-4	45.000004	1
CGTCACG	20	7.014718E-4	45.000004	37
AAGGACC	20	7.014718E-4	45.000004	37
AGTACGG	20	7.014718E-4	45.000004	2
GTAACGG	20	7.014718E-4	45.000004	2
TTCAGTG	25	3.875424E-5	45.0	17
ACGTTGG	25	3.875424E-5	45.0	2
CTATCAC	25	3.875424E-5	45.0	19
TATGGGT	25	3.875424E-5	45.0	4
ATGTACG	25	3.875424E-5	45.0	1