##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552019_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 157394 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.24445658665515 33.0 31.0 34.0 30.0 34.0 2 32.334790398617486 34.0 31.0 34.0 30.0 34.0 3 32.298759800246515 34.0 31.0 34.0 30.0 34.0 4 35.89587277786955 37.0 35.0 37.0 35.0 37.0 5 35.98076165546336 37.0 35.0 37.0 35.0 37.0 6 35.968645564633974 37.0 35.0 37.0 35.0 37.0 7 36.149560974370054 37.0 36.0 37.0 35.0 37.0 8 35.981676556920846 37.0 35.0 37.0 35.0 37.0 9 37.90237239030713 39.0 38.0 39.0 35.0 39.0 10 37.596439508494605 39.0 37.0 39.0 35.0 39.0 11 37.54149459318653 39.0 37.0 39.0 35.0 39.0 12 37.36604953174835 39.0 37.0 39.0 35.0 39.0 13 37.28682160692276 39.0 37.0 39.0 34.0 39.0 14 38.457952653849574 40.0 38.0 41.0 34.0 41.0 15 38.575085454337525 40.0 38.0 41.0 35.0 41.0 16 38.59310393026418 40.0 38.0 41.0 35.0 41.0 17 38.539868101706546 40.0 38.0 41.0 35.0 41.0 18 38.37127209423485 40.0 37.0 41.0 35.0 41.0 19 38.20602437195827 40.0 37.0 41.0 34.0 41.0 20 38.0238446192358 40.0 35.0 41.0 34.0 41.0 21 37.88451275143906 40.0 35.0 41.0 34.0 41.0 22 37.91504123410041 40.0 35.0 41.0 34.0 41.0 23 37.86668487998272 40.0 35.0 41.0 34.0 41.0 24 37.80402683710942 40.0 35.0 41.0 34.0 41.0 25 37.59686519181163 39.0 35.0 41.0 33.0 41.0 26 37.64558369442291 39.0 35.0 41.0 34.0 41.0 27 37.633054627241194 39.0 35.0 41.0 34.0 41.0 28 37.544747576146484 39.0 35.0 41.0 33.0 41.0 29 37.48203870541444 39.0 35.0 41.0 33.0 41.0 30 37.25165508215053 39.0 35.0 41.0 33.0 41.0 31 37.13860757080956 39.0 35.0 41.0 33.0 41.0 32 36.92591839587278 39.0 35.0 41.0 33.0 41.0 33 36.68357751883808 39.0 35.0 41.0 32.0 41.0 34 36.45645323201647 39.0 35.0 41.0 31.0 41.0 35 36.287202815863374 39.0 35.0 41.0 30.0 41.0 36 36.145882308093064 39.0 35.0 41.0 30.0 41.0 37 36.06653366710294 39.0 35.0 41.0 30.0 41.0 38 35.91394208165495 39.0 35.0 41.0 29.0 41.0 39 35.8455722581547 39.0 35.0 41.0 29.0 41.0 40 35.7292908243008 39.0 35.0 41.0 28.0 41.0 41 35.66302400345629 39.0 35.0 41.0 28.0 41.0 42 35.54167249069215 38.0 35.0 41.0 27.0 41.0 43 35.40969160196704 38.0 35.0 41.0 26.0 41.0 44 35.40459610912741 38.0 35.0 41.0 27.0 41.0 45 35.37070028082392 38.0 35.0 41.0 26.0 41.0 46 35.283676633162635 38.0 35.0 40.0 26.0 41.0 47 35.26491479980177 38.0 35.0 40.0 27.0 41.0 48 35.21797527224672 38.0 35.0 40.0 26.0 41.0 49 35.16068592195382 37.0 35.0 40.0 27.0 41.0 50 35.06174949489815 37.0 35.0 40.0 26.0 41.0 51 34.26264025312274 36.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 2.0 11 1.0 12 4.0 13 3.0 14 5.0 15 9.0 16 23.0 17 22.0 18 49.0 19 88.0 20 156.0 21 245.0 22 377.0 23 598.0 24 918.0 25 1439.0 26 2238.0 27 2536.0 28 2530.0 29 2323.0 30 2503.0 31 2804.0 32 3347.0 33 4767.0 34 9498.0 35 15247.0 36 12054.0 37 15961.0 38 27856.0 39 49731.0 40 57.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.39981193692263 20.68947990393535 23.166067321498915 17.74464083764311 2 35.802508354829286 24.291269044563325 24.944407029492865 14.961815571114528 3 31.17780855687002 22.582182294115405 31.09140119699607 15.1486079520185 4 27.987089723877656 24.1889779788302 30.197466231241343 17.626466066050803 5 23.52758046685388 28.797158722695908 28.87340051081998 18.801860299630228 6 24.66993659224621 32.07746165673406 28.492826918433995 14.75977483258574 7 73.2728058248726 6.6768745949655015 15.156232130830908 4.8940874493309785 8 73.10634458746839 6.567594698654331 15.046316886285375 5.279743827591903 9 66.68106789331233 8.502865420536997 17.432049506334423 7.384017179816257 10 38.8737817197606 22.77342211265995 23.413217784667776 14.939578382911675 11 30.366468861583034 22.720688209207466 27.354282882447873 19.55856004676163 12 26.48131440842726 20.76762773676252 33.79036049658818 18.960697358222042 13 23.983760499129573 23.380815024715044 34.053394665616224 18.582029810539154 14 19.252322197796612 27.793308512395644 32.9847389354105 19.969630354397243 15 18.744678958537175 22.718146816269996 38.81278828926135 19.724385935931483 16 20.79304166613721 22.149510146511304 35.759304674892306 21.298143512459177 17 20.168494351754195 22.798200693800272 32.27823169879411 24.75507325565142 18 21.226984510210045 22.95767310062645 34.2166791618486 21.59866322731489 19 25.017472076445102 23.248662591966657 30.62632628943924 21.107539042149 20 23.478658652807603 25.458403751095975 31.07361144643379 19.98932614966263 21 22.52118886361615 25.526386012173276 31.362059544836523 20.590365579374055 22 20.732048235637954 23.91959032745848 30.507516169612565 24.840845267291005 23 21.235879385491188 24.59369480412214 30.813118670343215 23.357307140043456 24 21.067512103383866 24.014892562613568 32.52919425136918 22.38840108263339 25 20.399125760829513 25.237937913770537 32.019644967406634 22.343291357993316 26 20.020458213146625 25.489535814579973 31.13651092163615 23.353495050637253 27 21.994485177325693 24.987610709429838 32.22232105416979 20.79558305907468 28 19.294890529499217 24.36624013621866 33.1708959680801 23.167973366202016 29 21.21300684905397 23.679428694867656 31.851277685299312 23.256286770779063 30 21.340711844161785 23.6902296148519 32.03171658385961 22.9373419571267 31 23.18512776852993 24.361792698578093 29.054474757614653 23.398604775277327 32 23.718820285398426 24.100029226018783 29.14024676925423 23.040903719328565 33 22.915740117158215 24.147680343596324 29.304166613720977 23.63241292552448 34 21.737169142406955 23.198470081451646 30.62632628943924 24.43803448670216 35 22.558674409443817 22.34964484033699 30.876018145545576 24.21566260467362 36 24.52825393598231 22.984993074704246 30.660635094095074 21.82611789521837 37 22.6463524657865 24.19151937176767 31.614292793880328 21.54783536856551 38 22.223845889932274 25.570860388578982 29.480793422875077 22.72450029861367 39 24.53587811479472 23.081566006328067 30.727346658703635 21.655209220173578 40 22.15776967355808 22.35663367091503 33.2776344714538 22.20796218407309 41 20.68376176982604 23.261369556654003 30.630773727079813 25.424094946440146 42 22.380141555586615 23.38017967648068 30.162522078351145 24.07715668958156 43 24.19533146117387 20.90613365185458 30.27116662642795 24.6273682605436 44 22.12727295830845 22.788670470284764 29.747004333074955 25.337052238331832 45 22.150780842980037 23.16924406267075 30.023380815024716 24.656594279324498 46 22.885878750142954 23.89417639808379 31.16383089571394 22.056113956059317 47 21.395987140551735 22.67113104692682 32.9205687637394 23.012313048782037 48 21.813410930531024 21.997026570263163 31.98279476981333 24.20676772939248 49 22.70798124452012 21.758770982375438 32.52347611725987 23.009771655844567 50 21.338805799458683 21.790538394093804 32.19245968715453 24.678196119292984 51 21.519244698018987 23.107615283937125 29.20505228915969 26.168087728884203 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 157.0 1 290.0 2 423.0 3 2340.5 4 4258.0 5 2699.0 6 1140.0 7 1130.0 8 1120.0 9 1124.0 10 1128.0 11 1146.0 12 1164.0 13 1168.0 14 1172.0 15 1089.5 16 1007.0 17 979.5 18 952.0 19 840.5 20 729.0 21 807.5 22 886.0 23 880.5 24 875.0 25 938.5 26 1203.5 27 1405.0 28 1537.5 29 1670.0 30 1869.0 31 2068.0 32 2219.5 33 2371.0 34 2597.5 35 2824.0 36 2974.0 37 3124.0 38 3470.5 39 3817.0 40 4602.0 41 5387.0 42 6281.0 43 7175.0 44 8659.0 45 10143.0 46 11580.0 47 13017.0 48 14069.0 49 15121.0 50 14504.0 51 13887.0 52 12274.5 53 10662.0 54 9405.5 55 8149.0 56 7452.5 57 6756.0 58 6528.5 59 6301.0 60 6052.0 61 5803.0 62 5350.0 63 4897.0 64 4507.5 65 4118.0 66 3785.0 67 3452.0 68 3001.0 69 2550.0 70 2256.0 71 1962.0 72 1897.5 73 1833.0 74 1516.0 75 948.5 76 698.0 77 560.5 78 423.0 79 337.5 80 252.0 81 238.0 82 224.0 83 129.5 84 35.0 85 33.0 86 31.0 87 23.5 88 16.0 89 12.0 90 8.0 91 5.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 157394.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.326111541736026 #Duplication Level Percentage of deduplicated Percentage of total 1 75.06423752134343 28.769203400383752 2 8.295343401356034 6.358565129547506 3 3.071796827080881 3.53190083484758 4 1.861644812094889 2.853984268777717 5 1.4041078858810072 2.690699772545332 6 1.1554465129386802 2.6570263161238676 7 0.9316512772905856 2.4994599540007876 8 0.862026092866734 2.643048654967788 9 0.8106360757919864 2.7961675794502967 >10 6.450276014123967 38.99640392899349 >50 0.05802098701987633 1.5318245930594558 >100 0.03149710723936144 2.395898191798925 >500 0.0016577424862821808 0.3240275995273009 >1k 0.0016577424862821808 1.9517897759762124 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3072 1.9517897759762124 No Hit GCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC 510 0.3240275995273009 TruSeq Adapter, Index 20 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCC 485 0.3081438936681195 No Hit CTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGCT 379 0.24079698082519027 TruSeq Adapter, Index 27 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC 341 0.21665374791923453 TruSeq Adapter, Index 20 (95% over 21bp) GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 246 0.15629566565434513 No Hit TCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC 224 0.1423180044982655 TruSeq Adapter, Index 20 (95% over 21bp) AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 219 0.13914126332642923 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 202 0.12834034334218586 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 191 0.12135151276414602 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 189 0.12008081629541151 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGC 172 0.10927989631116813 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 161 0.10229106573312832 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 158 0.10038502103002656 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.25032720434069916 0.0 2 0.0 0.0 0.0 1.0457831937685045 0.0 3 0.0 0.0 0.0 1.437793054373102 0.0 4 0.0 0.0 0.0 2.0261255193971817 0.0 5 0.0 0.0 0.0 3.6144961053153235 0.0 6 0.0 0.0 0.0 4.508431071070054 0.0 7 0.0 0.0 0.0 5.434133448543147 0.0 8 0.0 0.0 0.0 6.838888394729151 0.0 9 0.0 0.0 0.0 7.488214290252487 0.0 10 0.0 0.0 0.0 8.821174885954992 0.0 11 0.0 0.0 0.0 10.474350991778595 0.0 12 0.0 0.0 0.0 11.80222880160616 0.0 13 0.0 0.0 0.0 12.250784655069443 0.0 14 0.0 0.0 0.0 12.444565866551457 0.0 15 0.0 0.0 0.0 12.826410155406178 0.0 16 0.0 0.0 0.0 13.614877314255944 0.0 17 0.0 0.0 0.0 14.529143423510426 0.0 18 0.0 0.0 0.0 15.640367485418759 0.0 19 0.0 0.0 0.0 16.167071171709214 0.0 20 0.0 0.0 0.0 16.69186881329657 0.0 21 0.0 0.0 0.0 17.281471974789383 0.0 22 0.0 0.0 0.0 17.827236108110856 0.0 23 0.0 0.0 0.0 18.394602081400816 0.0 24 0.0 0.0 0.0 18.824097487833082 0.0 25 0.0 0.0 0.0 19.230085009593758 0.0 26 0.0 0.0 0.0 19.589056762011257 0.0 27 0.0 0.0 0.0 19.953746648538065 0.0 28 0.0 0.0 0.0 20.34639185737703 0.0 29 0.0 0.0 0.0 20.730777539169218 0.0 30 0.0 0.0 0.0 21.129776230351855 0.0 31 0.0 0.0 0.0 21.512255867440945 0.0 32 0.0 0.0 0.0 21.85597926223363 0.0 33 0.0 0.0 0.0 22.256248649885002 0.0 34 0.0 0.0 0.0 22.617126447005603 0.0 35 0.0 0.0 0.0 22.978639592360572 0.0 36 0.0 0.0 0.0 23.343964827121745 0.0 37 0.0 0.0 0.0 23.721997026570264 0.0 38 0.0 0.0 0.0 24.073344600175357 0.0 39 0.0 0.0 0.0 24.42215078084298 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGTAAG 20 7.014718E-4 45.000004 1 GGTACTT 30 2.1535325E-6 45.000004 7 AAATCAC 20 7.014718E-4 45.000004 19 CATATTA 40 6.7502697E-9 45.000004 28 ATTAGTC 30 2.1535325E-6 45.000004 31 CGTCTCG 20 7.014718E-4 45.000004 42 TCGATGG 20 7.014718E-4 45.000004 2 TGCGCCA 20 7.014718E-4 45.000004 19 CAAGGGT 20 7.014718E-4 45.000004 4 TAGATGA 20 7.014718E-4 45.000004 16 TATCGCG 20 7.014718E-4 45.000004 1 CGTCACG 20 7.014718E-4 45.000004 37 AAGGACC 20 7.014718E-4 45.000004 37 AGTACGG 20 7.014718E-4 45.000004 2 GTAACGG 20 7.014718E-4 45.000004 2 TTCAGTG 25 3.875424E-5 45.0 17 ACGTTGG 25 3.875424E-5 45.0 2 CTATCAC 25 3.875424E-5 45.0 19 TATGGGT 25 3.875424E-5 45.0 4 ATGTACG 25 3.875424E-5 45.0 1 >>END_MODULE