SRR3552018_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552018_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	473389
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4328	0.9142586752121407	No Hit
GCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGC	767	0.16202319868015522	Illumina PCR Primer Index 6 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCC	604	0.12759062842609356	No Hit
CTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGCT	510	0.107733808770377	Illumina PCR Primer Index 6 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	35	1.2099008E-7	45.000004	1
TTGCGAG	20	7.029076E-4	45.000004	1
TGCGTAG	20	7.029076E-4	45.000004	1
CGTTTTT	2130	0.0	41.30282	1
CCTCGAT	175	0.0	41.142857	15
AGGGTAC	80	0.0	39.375004	6
CTCGATC	180	0.0	38.750004	16
TTAGGCG	35	6.2405034E-6	38.57143	1
AGTAACG	35	6.2405034E-6	38.57143	1
CACAACG	235	0.0	38.29787	12
ACAACGA	230	0.0	38.152176	13
GGAACAC	280	0.0	37.76786	8
TCGATCA	185	0.0	37.7027	17
CGGGTAC	90	0.0	37.500004	6
CAGGGTA	90	0.0	37.500004	5
AACGGGC	90	0.0	37.500004	4
TACGAGG	90	0.0	37.500004	2
CGTGCGG	60	1.546141E-10	37.499996	2
CGCATCG	30	1.1389077E-4	37.499996	21
TTCACGG	30	1.1389077E-4	37.499996	2