SRR3552017_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552017_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	615538
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8225	1.336229444810881	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCG	2193	0.35627369878057896	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTC	1911	0.31046011781563443	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGC	1870	0.30379927802995105	No Hit
GCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTCTGC	1179	0.19153975871514026	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCC	1003	0.1629468854887919	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCATTCG	20	7.0307293E-4	45.000004	25
CATTCGC	20	7.0307293E-4	45.000004	26
TACGCGG	35	1.2107012E-7	45.000004	2
ACGTCGG	40	6.8066583E-9	45.000004	2
ATAACGG	45	3.8380676E-10	45.000004	2
CGTCATA	20	7.0307293E-4	45.000004	38
TATAACG	20	7.0307293E-4	45.000004	1
GTACGAG	20	7.0307293E-4	45.000004	1
TTACGCG	25	3.8886872E-5	45.0	1
CGTTTTT	3545	0.0	43.222847	1
CGAATAT	85	0.0	39.705883	14
TCGACGG	70	0.0	38.57143	2
CTAGCGG	100	0.0	38.25	2
ACGAAGG	95	0.0	37.894733	2
CGGCGAA	60	1.546141E-10	37.499996	31
CCTCGTC	60	1.546141E-10	37.499996	36
CCGTCGA	30	1.1393059E-4	37.499996	41
GCGATAT	30	1.1393059E-4	37.499996	9
CATCGTA	30	1.1393059E-4	37.499996	35
CTCGAGG	30	1.1393059E-4	37.499996	2