SRR3552012_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552012_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	211462
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4627	2.1880999895962394	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCG	3110	1.4707134142304528	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGC	2582	1.2210231625540287	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTC	2368	1.1198229469124477	No Hit
GCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	1404	0.6639490783214006	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCT	658	0.3111670181876649	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGCGAAAAT	460	0.21753317380900586	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGCGAAAATCGTA	451	0.21327708997361228	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCC	423	0.20003594026349888	No Hit
GAACTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCT	408	0.19294246720450955	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTC	399	0.18868638336911597	No Hit
CTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCT	376	0.17780972467866565	No Hit
CCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	331	0.1565293055016977	No Hit
TCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	264	0.12484512583821206	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGTGTT	20	7.020218E-4	45.000004	9
ACCGGGC	20	7.020218E-4	45.000004	4
TAGCGAT	20	7.020218E-4	45.000004	36
TACGGGA	20	7.020218E-4	45.000004	4
AGTATGA	35	1.2056444E-7	45.000004	3
GTAATGC	20	7.020218E-4	45.000004	9
TAGTTCC	30	2.1570759E-6	45.000004	17
GTTCCCT	30	2.1570759E-6	45.000004	19
TTAACAG	20	7.020218E-4	45.000004	21
CCAAGCG	30	2.1570759E-6	45.000004	20
GGTGATC	20	7.020218E-4	45.000004	9
GGGTTAC	20	7.020218E-4	45.000004	7
GTAAGTG	20	7.020218E-4	45.000004	1
TAGTGCG	20	7.020218E-4	45.000004	1
ATTGAGG	35	1.2056444E-7	45.000004	2
GACCTAG	20	7.020218E-4	45.000004	1
CTAGGAA	20	7.020218E-4	45.000004	4
TAGTCAG	20	7.020218E-4	45.000004	33
GTAGTGC	20	7.020218E-4	45.000004	12
GATAGCG	20	7.020218E-4	45.000004	9