SRR3552011_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552011_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	422668
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5033	1.1907691142930148	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCG	998	0.23611912896173828	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTC	879	0.20796464364465725	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCC	790	0.18690792773524373	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGC	769	0.1819394891498765	No Hit
GCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC	666	0.15757048085021816	No Hit
CCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC	577	0.1365137649408046	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	485	0.11474727209062432	No Hit
CTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGCT	460	0.10883246425090141	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGACGG	60	0.0	45.000004	2
CTATACG	20	7.028218E-4	45.000004	1
CGTTCAT	20	7.028218E-4	45.000004	17
TAGCCGG	30	2.1622327E-6	45.000004	2
GTATGCG	20	7.028218E-4	45.000004	1
TCCCGAA	20	7.028218E-4	45.000004	28
TATAGCG	20	7.028218E-4	45.000004	1
CAGTACG	20	7.028218E-4	45.000004	1
TCGACAG	20	7.028218E-4	45.000004	1
TACGAAT	35	1.2094824E-7	45.0	12
GCTACGA	35	1.2094824E-7	45.0	10
CGTTTTT	2130	0.0	42.042255	1
CGTAAGG	50	1.0786607E-9	40.500004	2
TATACGG	45	1.9233994E-8	40.0	2
TACGGGT	35	6.238919E-6	38.571426	4
GCGATTA	35	6.238919E-6	38.571426	9
GGATTAC	35	6.238919E-6	38.571426	8
TTAGTCA	65	9.094947E-12	38.07692	32
TTCACGG	30	1.13870075E-4	37.500004	2
TAAGTAG	30	1.13870075E-4	37.500004	1