SRR3552004_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552004_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	395544
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2701	0.6828570272839432	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCC	638	0.16129684687417833	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGC	548	0.13854337317719395	TruSeq Adapter, Index 22 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	489	0.12362720708694862	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	456	0.11528426673138766	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTC	442	0.11174483748963454	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCG	441	0.11149202111522358	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	411	0.10390752988289546	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGT	25	3.88615E-5	45.0	4
TCTACTA	20	7.0276705E-4	45.0	24
TAACCCC	20	7.0276705E-4	45.0	25
ATTTGCG	20	7.0276705E-4	45.0	1
TTATAGG	45	1.9228537E-8	40.000004	2
TAACCGG	40	3.45055E-7	39.375	2
GCGATCA	40	3.45055E-7	39.375	9
CCCCACG	80	0.0	39.375	38
CGTTTTT	1215	0.0	39.25926	1
CGTTAGG	35	6.237902E-6	38.571426	2
TACGGGC	90	0.0	37.500004	4
ATACTGG	60	1.546141E-10	37.499996	2
TCTACGG	30	1.1385685E-4	37.499996	2
GCGTAAG	30	1.1385685E-4	37.499996	1
CACGAGC	85	0.0	37.058823	41
GTGGCGT	55	2.739398E-9	36.81818	34
CTACGAA	55	2.739398E-9	36.81818	11
CGAATAT	55	2.739398E-9	36.81818	14
GCTACGA	55	2.739398E-9	36.81818	10
ACAACGA	25	0.0021054414	36.0	13