SRR3552002_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552002_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	438509
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCG	4481	1.0218718429952407	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGC	3587	0.8179991744753243	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTC	3311	0.7550586190933367	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2859	0.6519820573808064	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	1716	0.3913260617227925	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCT	925	0.21094207872586423	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCC	862	0.196575212823454	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	820	0.1869973022218472	No Hit
CTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGCT	766	0.17468284573406703	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTC	692	0.15780747943599788	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTGGTCAT	677	0.15438679707828118	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCT	676	0.15415875158776673	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTGGTCATCGTA	616	0.14047602215689986	No Hit
TCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	527	0.12017997350111399	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	469	0.10695333505127602	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	461	0.10512897112716045	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	459	0.10467288014613155	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGCGAT	35	1.209628E-7	45.000004	6
GCGATAT	35	1.209628E-7	45.000004	9
TTACGAG	30	2.16242E-6	45.000004	1
TCACCGT	20	7.0285104E-4	45.0	15
CGACGAA	20	7.0285104E-4	45.0	19
TATAGCG	20	7.0285104E-4	45.0	1
ATTATCC	25	3.886846E-5	45.0	45
ATCGCCA	20	7.0285104E-4	45.0	24
GCATATT	40	6.7975634E-9	45.0	27
TCGTTCA	55	6.002665E-11	40.909092	16
GGTATGC	55	6.002665E-11	40.909092	8
CGAATAT	50	1.0786607E-9	40.5	14
GATGAAT	370	0.0	40.135136	20
TTGCGAG	45	1.9235813E-8	40.0	1
GCGATAC	45	1.9235813E-8	40.0	9
TGATTCG	40	3.451696E-7	39.375	15
CGATGAA	320	0.0	39.375	19
TGCGTAG	40	3.451696E-7	39.375	1
TAATCGT	40	3.451696E-7	39.375	21
CGTTTTT	1450	0.0	39.103447	1