SRR3552001_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552001_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	411575
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2128	0.5170382068881735	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	1194	0.2901050841280447	No Hit
CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	1004	0.24394095851302924	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCG	942	0.22887687541760313	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCC	842	0.20457996719917393	No Hit
CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT	834	0.20263621454169956	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC	766	0.1861143169531677	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTC	731	0.1776103990767175	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	506	0.12294235558525178	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	482	0.11711109761282877	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	435	0.10569155075016703	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATTTG	25	3.886427E-5	45.0	10
TACGGGT	20	7.0280035E-4	45.0	4
CTTGCGA	25	3.886427E-5	45.0	12
AAACCGC	25	3.886427E-5	45.0	45
CGAATAT	55	1.8189894E-12	45.0	14
TATAGCG	20	7.0280035E-4	45.0	1
CGGTCAA	20	7.0280035E-4	45.0	31
CGCAACT	20	7.0280035E-4	45.0	8
CCACGCA	20	7.0280035E-4	45.0	5
GATAGCG	20	7.0280035E-4	45.0	1
CGAATAG	60	0.0	44.999996	26
GCGATAT	30	2.1620926E-6	44.999996	9
TCGTAAC	60	0.0	44.999996	34
CGTAACC	60	0.0	44.999996	35
CTCGTAA	65	0.0	41.53846	33
CGGGATA	90	0.0	40.0	6
TCGGCGT	120	0.0	39.374996	4
ACACGAC	115	0.0	39.130436	26
CACGACC	115	0.0	39.130436	27
TAGGGTA	115	0.0	39.130436	5