SRR3551999_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551999_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	434859
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14042	3.229092648421672	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTC	2165	0.49786252555426014	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCG	1489	0.3424098385913595	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGC	1095	0.2518057577283671	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCC	935	0.21501222235253267	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	754	0.17338953545861993	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCT	698	0.16051179807707786	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	578	0.13291664654520202	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTT	491	0.11291016168459203	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCG	467	0.10739113137821685	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGGGT	40	6.7975634E-9	45.000004	4
TTATGAG	20	7.028443E-4	45.000004	1
GTAATCG	20	7.028443E-4	45.000004	1
CGAATGC	20	7.028443E-4	45.000004	45
TGTAGCG	20	7.028443E-4	45.000004	1
TAAGCGG	40	6.7975634E-9	45.000004	2
TATCGAG	20	7.028443E-4	45.000004	1
ACCGGTA	25	3.8867925E-5	45.0	41
ACGGGTA	35	1.2095916E-7	45.0	5
GTATGCG	35	1.2095916E-7	45.0	1
CGAATAT	30	2.1623782E-6	44.999996	14
ACGTAGG	30	2.1623782E-6	44.999996	2
CGTTTTT	6315	0.0	43.646084	1
TAAGGGC	100	0.0	40.5	4
TACCGGT	40	3.4516052E-7	39.375004	40
GTTTTTT	7190	0.0	38.835186	2
ATGTGCG	35	6.2393356E-6	38.571426	1
ATTCGGC	35	6.2393356E-6	38.571426	17
GCGATAT	35	6.2393356E-6	38.571426	9
AAGGGAT	195	0.0	38.076927	5