SRR3551996_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551996_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	480297
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3027	0.6302350420677205	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTC	2197	0.4574253014280747	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCG	2158	0.44930532566307935	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGC	1597	0.3325025973512223	No Hit
GCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	1297	0.270041245312796	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCC	871	0.1813461254182308	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	805	0.16760462796977704	No Hit
CCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	780	0.16239951529990818	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGCT	714	0.1486580178514544	Illumina Single End Adapter 1 (95% over 22bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	634	0.1320016573078741	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCT	536	0.1115976156419882	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	503	0.10472686691776129	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	487	0.10139559480904523	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	25	3.8874015E-5	45.000004	21
TTTCACG	20	7.029182E-4	45.0	16
TATTGCG	20	7.029182E-4	45.0	1
CTCGAAT	20	7.029182E-4	45.0	43
GCATATT	55	1.8189894E-12	45.0	27
CGAATAT	110	0.0	40.909092	14
AACGGGA	165	0.0	40.90909	4
TTAGTCA	50	1.0786607E-9	40.500004	32
AGGGCGC	95	0.0	40.263157	6
TGATTCA	90	0.0	40.0	44
CGACAGG	40	3.4526238E-7	39.375	2
CGTTTTT	1320	0.0	38.863636	1
TATGCGG	35	6.2406943E-6	38.57143	2
CGTAAGG	70	0.0	38.57143	2
CTACGAA	135	0.0	38.333332	11
CATATGC	60	1.546141E-10	37.500004	33
GACAACG	30	1.13893235E-4	37.500004	1
TCGGCGT	60	1.546141E-10	37.500004	4
TCTCGTA	30	1.13893235E-4	37.500004	28
TACTACG	30	1.13893235E-4	37.500004	1