SRR3551993_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551993_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	398234
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCG	2497	0.6270182857315046	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTC	2369	0.5948763792142309	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2172	0.5454079762149892	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGC	1692	0.4248758267752125	No Hit
GCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGC	1457	0.36586529527865524	TruSeq Adapter, Index 23 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGC	786	0.1973713947076342	TruSeq Adapter, Index 23 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGCT	762	0.19134478723564538	TruSeq Adapter, Index 20 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCC	646	0.16221618445436603	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCT	599	0.15041407815505456	No Hit
TCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGC	464	0.1165144111251174	TruSeq Adapter, Index 23 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCT	426	0.10697228262780176	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	35	1.209246E-7	45.000004	6
ATACCGG	35	1.209246E-7	45.000004	2
CGGCGAA	20	7.0277276E-4	45.0	31
TCGTTCA	25	3.8861985E-5	45.0	16
CAACGAT	20	7.0277276E-4	45.0	37
GCGAAAT	20	7.0277276E-4	45.0	17
CGTTCAT	25	3.8861985E-5	45.0	17
TGATTCG	25	3.8861985E-5	45.0	15
TGCGAAA	20	7.0277276E-4	45.0	16
GTACTAG	25	3.8861985E-5	45.0	1
GCGATAC	25	3.8861985E-5	45.0	9
CTCGAAT	20	7.0277276E-4	45.0	43
TCGAATG	20	7.0277276E-4	45.0	44
ACACGAC	50	1.0786607E-9	40.5	26
TTAATAG	45	1.9228537E-8	40.000004	1
TAGTTAA	75	0.0	39.0	38
CGTTTTT	1035	0.0	38.260868	1
GCGAAAG	30	1.13858245E-4	37.499996	1
CGCATTG	30	1.13858245E-4	37.499996	24
GCCGATT	30	1.13858245E-4	37.499996	9