SRR3551991_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551991_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	608316
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14859	2.4426449411161304	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC	5464	0.8982173738648992	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCG	3710	0.6098803911125139	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGC	2867	0.47130110008613946	No Hit
GAACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCT	1668	0.27419959363225693	No Hit
GCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	1279	0.21025256610051357	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCC	975	0.16027853944331566	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCT	953	0.1566619980404921	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTC	724	0.11901708980201078	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTT	662	0.10882501857587175	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	640	0.10520847717304822	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGGT	20	7.030666E-4	45.0	4
CAGTCGA	30	2.1638098E-6	44.999996	41
CGTTTTT	6490	0.0	43.335903	1
TTGTGCG	65	0.0	41.53846	1
GTCGAAT	50	1.0804797E-9	40.500004	43
TAACGTC	85	0.0	39.705883	32
ATGAATG	510	0.0	39.705883	21
GTAGCCG	40	3.454643E-7	39.375	43
CATCGTT	40	3.454643E-7	39.375	36
GATGAAT	540	0.0	39.166664	20
CGATGAA	535	0.0	38.69159	19
GCAAACG	35	6.243439E-6	38.57143	1
CGACAGG	70	0.0	38.57143	2
ATAACGC	35	6.243439E-6	38.57143	11
GTTTTTT	7560	0.0	38.3631	2
GCGATTC	65	9.094947E-12	38.07692	9
CGTAACC	130	0.0	38.07692	35
CCGATGA	540	0.0	37.916664	18
TACGGCT	430	0.0	37.67442	7
TGAATGA	545	0.0	36.74312	22