SRR3551988_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551988_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	470123
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8473	1.8022942931956105	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTC	2438	0.5185876887537942	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCG	2155	0.4583906764825375	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGC	1681	0.3575659986854504	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCC	1110	0.23610842268938131	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	973	0.20696711286195316	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCT	658	0.13996337128793954	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	580	0.12337196861246952	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCT	501	0.10656785564628832	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTT	488	0.10380262186704331	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTG	478	0.10167551895993177	No Hit
CTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGCT	476	0.10125009837850946	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	474	0.10082467779708715	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAGTCG	20	7.029027E-4	45.000004	1
TAGTGCG	20	7.029027E-4	45.000004	1
ATTTCGT	20	7.029027E-4	45.000004	12
CGTTTTT	3745	0.0	42.47663	1
GTTAATC	45	1.924127E-8	40.0	40
TAATGCG	35	6.240414E-6	38.571426	1
ATACTAT	65	9.094947E-12	38.076927	45
ATTGGGC	160	0.0	37.968754	4
AGATCGG	30	1.13889575E-4	37.499996	2
CGAGGGT	60	1.546141E-10	37.499996	4
CATATGC	145	0.0	37.241383	33
CGGGTAC	80	0.0	36.562504	6
GGTACCT	160	0.0	36.562504	8
GTTTTTT	4515	0.0	36.1794	2
TATGGGC	175	0.0	36.000004	4
TTGATCC	150	0.0	36.0	17
CGGCGAA	25	0.002105845	36.0	31
CGAAAGG	75	1.8189894E-12	36.0	2
TAGCGCG	25	0.002105845	36.0	1
ACCGAGT	25	0.002105845	36.0	28